Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00603X
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850...    27   9.2  
09_01_0149 + 2240183-2241133                                           27   9.2  
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313...    27   9.2  
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152...    27   9.2  
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248...    27   9.2  

>11_02_0119 -
           8502455-8503015,8503311-8504009,8504512-8504571,
           8504744-8504800
          Length = 458

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 LNYSCDWKHIIIMRIFTLASGIS 171
           L   C WK +++ R+F    G+S
Sbjct: 361 LELQCQWKELLMTRVFDAIKGVS 383


>09_01_0149 + 2240183-2241133
          Length = 316

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 233 LLRVAYGRYI---LHRVHRVYRKVEIPEARVNILIIIMCFQSQL*FNV 99
           +LRV Y   +   ++ V +V R   I    V +L+ ++CF + L FNV
Sbjct: 151 VLRVTYMALLGVLIYSVMQVQRHYLIKVLSVQVLLFVLCFLAFLYFNV 198


>08_02_0819 -
           21529913-21530064,21531016-21531082,21531284-21531373,
           21531506-21531622,21532026-21532145,21532313-21533581
          Length = 604

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 269 QMGSDFGSSTSKNTKWECINRRNEPLTRTIAVAWDSQNETMAQATMHLTALCNTARDNP 445
           + GSD  S TS+N+K     R +  L+  +     S N+ ++ A+   TA  +  R  P
Sbjct: 295 ESGSDVSSQTSENSK--AATRPSRTLSSPVLHRSSSPNKVLSAASPASTAFQSPLRTRP 351


>05_05_0339 +
           24213179-24213821,24214402-24214623,24215035-24215282,
           24215385-24215524,24215579-24215753
          Length = 475

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 27  QHTF-TLEIENNCIFNLMNTCTYERYIKLQL*LETHYNNENIYSGFWYFNFTVNTMYPMQ 203
           +H F  +    + +  L+  C Y +Y++ +L   T Y +E +  GF   N     + P++
Sbjct: 85  EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGF-CLNMVDTPLCPLK 143

Query: 204 YISSI 218
            ++++
Sbjct: 144 VVTNL 148


>04_04_0766 -
           27923120-27923554,27923843-27924580,27924815-27924874,
           27925281-27925328
          Length = 426

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 103 LNYSCDWKHIIIMRIFTLASGIS 171
           L   C WK +++ R+F    G+S
Sbjct: 375 LELQCQWKELLMTRVFDAIKGVS 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,834
Number of Sequences: 37544
Number of extensions: 242019
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)