Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00603X
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05) 33 0.082
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_11680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054) 27 5.4
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 27 7.2
SB_23089| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_32017| Best HMM Match : ATP12 (HMM E-Value=1.6e-05)
Length = 123
Score = 33.5 bits (73), Expect = 0.082
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 356 IAVAWDSQNETMAQATMHLTALCNTARDNP 445
+A W+ Q T+ A+MHLT+L NT D P
Sbjct: 1 MASEWNMQTGTIKPASMHLTSLANTVIDKP 30
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 260 ECQQMGSDFGSSTSKNTKWECINRRNEP 343
+CQ+ G +FG+ K+T+ E + N+P
Sbjct: 96 DCQKAGEEFGNKNGKSTENETVGTGNDP 123
>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 281 DFGSSTSKNTKWEC--INRRNEPLTRTIAVAWDSQNETMAQATMHLTAL 421
D + + WEC N P+TR V W+++ + + + T++
Sbjct: 147 DIDTESEVEDSWECDKCKTMNHPMTRRCVVCWENREDEVCSTLVRTTSV 195
>SB_11680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +2
Query: 161 LVFQLYGKHDV------PYAVYIVHML-HVKDFIGGQLSSECQQMGSDFGSSTSKNTK 313
L++ G+ DV P Y + L H+KDF+G + QQ D S + +TK
Sbjct: 95 LLYMAMGQQDVSRVLTGPLTPYTIQFLRHMKDFLGIMFKIQAQQKQDDDDSKSGGDTK 152
>SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 146 YLLWLLVFQLYGKHDVPY 199
YL+W ++ LYG+H +PY
Sbjct: 98 YLIWAVLPTLYGRHCLPY 115
>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
Length = 425
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 327 LIHSHLVF-LDVDDPK---SLPIC*HSDDSCPPIKSFTCSIW 214
LI SH F D D+ + +LP C S P ++S TC+IW
Sbjct: 199 LIDSHRSFEKDSDEERHINNLPNCVGIVISAPSVQSMTCAIW 240
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 444 GLSRAVLHNAVKCMVACAIVSFCESHATAIVRVRGSFLR 328
G S + N M+A V+F +SH TA+ + G+FLR
Sbjct: 469 GNSWGIAVNKSNTMIA---VTFWDSHITAVFAIDGTFLR 504
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 27.1 bits (57), Expect = 7.2
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Frame = +2
Query: 188 DVPYAVYIVHMLHVKDFI--GGQLSSECQQMGSDFGSSTSKNTKWECI--NRRNEPLTRT 355
D PY V+ + + + + G L E Q++G DFG T W N + P +R+
Sbjct: 3028 DSPYGVFGISTYNTINTVEEGSVLRLEVQRLGGDFGDVT---ITWRITPGNSQIHPGSRS 3084
Query: 356 ----IAVAWDSQNETMAQATMHLTALCNTARDN 442
+A DS E Q T+ L + N A N
Sbjct: 3085 MFIEVAATNDSIPEGAQQFTLELVSADNGANLN 3117
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 264 HSDDSCPPIKS-FTCSIWTIYTA*GTSC 184
HSD C I S FTC+ YT GT+C
Sbjct: 154 HSDGYCINIPSTFTCACSVGYTGNGTNC 181
>SB_23089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 24 IQHTFTLEIENNCIFNLMNTCTYERYIKLQL*LETHYNNE 143
+QH T+E FN+ NTC +++ L L T NN+
Sbjct: 154 VQHMCTMENLTPLKFNVSNTCFTGPFLQRNLLLITCKNNQ 193
>SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 132 YNNENIYSGFWYFNFTVNTMYPMQYISSIC 221
+ +NI + F YFN +N+++ + I +IC
Sbjct: 58 FRTQNIDAIFCYFNGFINSLFSLASILTIC 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,891
Number of Sequences: 59808
Number of extensions: 299981
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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