Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00603X
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical...    36   0.010
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    29   1.6  

>AL117204-30|CAB55134.2|  269|Caenorhabditis elegans Hypothetical
           protein Y116A8C.27 protein.
          Length = 269

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 341 PLTRTIAVAWDSQNETMAQATMHLTALCNTARDNP 445
           PL   IA  W SQ+E +    M LT L  TA+DNP
Sbjct: 68  PLALAIAEEWSSQDEFLQLGQMRLTGLAFTAQDNP 102


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +2

Query: 284 FGSSTSKNTKWECINRRNEPLTRTIAVAWDSQNETMAQATMHLTALCNTARDN 442
           +G + SK +K   +NR +  LT+     W+S     A     L  + N    N
Sbjct: 364 YGRTLSKKSKIVALNRNSSQLTKNEKAFWNSDVSVQADVATSLVQVANALGAN 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,623
Number of Sequences: 27780
Number of extensions: 234113
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)