Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00602
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   130   2e-31
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   130   2e-31
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   4.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.9  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  130 bits (314), Expect = 2e-31
 Identities = 60/87 (68%), Positives = 68/87 (78%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 181
           F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRP
Sbjct: 27  FMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRP 86

Query: 182 RRDGERKRKSVRGCIVDANLSVLALLL 262
           RRDGERKRKSVRGCIV  +L+VLAL +
Sbjct: 87  RRDGERKRKSVRGCIVGQDLAVLALAI 113



 Score =  105 bits (253), Expect = 5e-24
 Identities = 53/78 (67%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
 Frame = +1

Query: 247 LGSVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEG 423
           L   I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEG
Sbjct: 109 LALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 424 KENAKPRHKAPKIQRLVT 477
           K   KP  KAPKIQRLVT
Sbjct: 169 K---KPYTKAPKIQRLVT 183


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  130 bits (314), Expect = 2e-31
 Identities = 60/87 (68%), Positives = 68/87 (78%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 181
           F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL   RVRLL+  GH CYRP
Sbjct: 27  FMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCYRP 86

Query: 182 RRDGERKRKSVRGCIVDANLSVLALLL 262
           RRDGERKRKSVRGCIV  +L+VLAL +
Sbjct: 87  RRDGERKRKSVRGCIVGQDLAVLALAI 113



 Score =  106 bits (254), Expect = 3e-24
 Identities = 54/78 (69%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
 Frame = +1

Query: 247 LGSVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEG 423
           L   IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEG
Sbjct: 109 LALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEG 168

Query: 424 KENAKPRHKAPKIQRLVT 477
           K   KP  KAPKIQRLVT
Sbjct: 169 K---KPYTKAPKIQRLVT 183


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -1

Query: 599 HLGFLLSLCKQFSIFSLRGLALSET----LLLQSGR*RLRCRTTGVTSLWILGALC-LGL 435
           +LG+     ++FS+ ++ G +         L+ S    + C   G+   W +GA C L +
Sbjct: 36  NLGYKQEFKREFSLLAVFGQSFGSMGLCPSLVGSMAFSMNCGAGGMVWSWFVGATCLLPI 95

Query: 434 AFSFPSLA 411
           AF+   LA
Sbjct: 96  AFALSELA 103


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 679 FCGALWLELLESRIEAERLRLISSW 605
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 362 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 457
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,884
Number of Sequences: 5004
Number of extensions: 51860
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)