Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00602
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   121   6e-28
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   118   4e-27
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    29   2.6  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  121 bits (291), Expect = 6e-28
 Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 178
           FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT+ RVRLL+ +G  C+R 
Sbjct: 27  FYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRG 86

Query: 179 -PRRDGERKRKSVRGCIVDANLSVLALLL 262
             RRDGER+RKSVRGCIV  +LSV+ L++
Sbjct: 87  YGRRDGERRRKSVRGCIVSQDLSVINLVI 115



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 47/76 (61%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = +1

Query: 256 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 429
           VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R    K GK+
Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKK 173

Query: 430 NAKPRHKAPKIQRLVT 477
            +    KAPKIQRLVT
Sbjct: 174 VS----KAPKIQRLVT 185



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 555 EYAKLLAQRKKESKVRRQDEI 617
           EY KLLAQR KE + RR + +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  118 bits (284), Expect = 4e-27
 Identities = 55/89 (61%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 178
           F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRG 86

Query: 179 -PRRDGERKRKSVRGCIVDANLSVLALLL 262
             RRDGER+RKSVRGCIV  +LSV+ L++
Sbjct: 87  YGRRDGERRRKSVRGCIVSQDLSVINLVI 115



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 48/76 (63%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = +1

Query: 256 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 429
           VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R    K GK+
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKK 173

Query: 430 NAKPRHKAPKIQRLVT 477
            +    KAPKIQRLVT
Sbjct: 174 VS----KAPKIQRLVT 185



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 555 EYAKLLAQRKKESKVRRQDEI 617
           EY KLLAQR KE + RR + +
Sbjct: 212 EYQKLLAQRLKEQRERRSESL 232


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/53 (24%), Positives = 32/53 (60%)
 Frame = +1

Query: 316 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 474
           ++ PK+A    ++ + + +DD+ R V  + +P+++  + A+   ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,776
Number of Sequences: 37544
Number of extensions: 380446
Number of successful extensions: 1085
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)