Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00602
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              143   1e-34
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.006
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)                      29   3.6  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.7  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.7  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)                 28   8.3  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          28   8.3  
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            28   8.3  
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)                       28   8.3  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   28   8.3  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   8.3  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  143 bits (346), Expect = 1e-34
 Identities = 62/79 (78%), Positives = 71/79 (89%)
 Frame = +2

Query: 26  EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 205
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 206 KSVRGCIVDANLSVLALLL 262
           KSVRGCIVD+ LSVL+L++
Sbjct: 62  KSVRGCIVDSQLSVLSLVI 80



 Score =  113 bits (273), Expect = 1e-25
 Identities = 55/77 (71%), Positives = 63/77 (81%)
 Frame = +1

Query: 247 LGSVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 426
           L  VIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R LP KEGK
Sbjct: 76  LSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK 135

Query: 427 ENAKPRHKAPKIQRLVT 477
              K + KAPKIQRLVT
Sbjct: 136 ---KAKSKAPKIQRLVT 149



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +3

Query: 555 EYAKLLAQRKKESKVRRQDEI 617
           +YAKLLA+R KE+K +R +++
Sbjct: 176 DYAKLLAKRAKEAKEKRHEQL 196


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -2

Query: 166 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 2
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 338 EARLGPRRRGTFP--SVNPGISWAPLRTITEPRPRDWRQQYIHELI 207
           E  L P  RG     S +P  + A   T+ E RPR W++  +H L+
Sbjct: 210 EKDLTPEERGDHSPQSHSPVQTMASTITVDETRPRGWKRTPLHRLV 255


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 32  EADQLGDEWKGYVL--RVAGGNDKQGFPMK 115
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 301 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 399
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 349 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 468
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
          Length = 262

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 450 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 364
           L  G S+FF+F+  E AFD +   II++A
Sbjct: 91  LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 450 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 364
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 450 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 364
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +1

Query: 268 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 426
           +GA+++P L +G V    P + G K   R++ +++L     E DVR +   RV   ++  
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326

Query: 427 ENAKPRHKAP 456
             A P+   P
Sbjct: 327 PPATPQEADP 336


>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
          Length = 317

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 450 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 364
           L  G S+FF+F+  E AFD +   I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 329 LGPRRR-GTFP-SVNPGISWAPLRTITEPRPRDWRQQYIHELI 207
           L P  R G  P S +P  + A   T+ E RPR W++  +H L+
Sbjct: 699 LTPEERVGNSPQSHSPVQTMASTITVDETRPRGWKRTPLHRLV 741


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 334 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 444
           A  ++ + +    DDV+  ++K ++P KEG E+  P+
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,882,266
Number of Sequences: 59808
Number of extensions: 420059
Number of successful extensions: 1226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)