Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00602
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   118   5e-27
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             116   1e-26
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.3  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.8  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  118 bits (283), Expect = 5e-27
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 2/89 (2%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 178
           FY+KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG 86

Query: 179 -PRRDGERKRKSVRGCIVDANLSVLALLL 262
             RR GER+RKSVRGCIV  +LSVL L++
Sbjct: 87  HGRRTGERRRKSVRGCIVSPDLSVLNLVI 115



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 50/79 (63%), Positives = 56/79 (70%), Gaps = 2/79 (2%)
 Frame = +1

Query: 247 LGSVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 420
           L  VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+
Sbjct: 111 LNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKK 170

Query: 421 GKENAKPRHKAPKIQRLVT 477
           GKE +    KAPKIQRLVT
Sbjct: 171 GKEVS----KAPKIQRLVT 185


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  116 bits (280), Expect = 1e-26
 Identities = 55/89 (61%), Positives = 69/89 (77%), Gaps = 2/89 (2%)
 Frame = +2

Query: 2   FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR- 178
           F++KR+  EV  D LG+E+KGYV ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R 
Sbjct: 27  FFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG 86

Query: 179 -PRRDGERKRKSVRGCIVDANLSVLALLL 262
             RR GER+RKSVRGCIV  +LSVL L++
Sbjct: 87  HGRRTGERRRKSVRGCIVSPDLSVLNLVI 115



 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 49/79 (62%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
 Frame = +1

Query: 247 LGSVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKE 420
           L  VIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+
Sbjct: 111 LNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKK 170

Query: 421 GKENAKPRHKAPKIQRLVT 477
           GK+ +    KAPKIQRLVT
Sbjct: 171 GKKVS----KAPKIQRLVT 185


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 292 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 438
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 280 EIPGLTDGNVPRRLGPKRASKIRKL 354
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,326,187
Number of Sequences: 28952
Number of extensions: 289999
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)