Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00600
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 9.0
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 25 9.0
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 319 QSREQGPQD--HHRGPAPRHSEKHRRPKPTE--LSVCCRERSETPRHRNKPSRPVWSRRS 152
+ +GP+D HH+GP + E H+ PK E +E + P+ ++ RP + +S
Sbjct: 380 KEHHKGPKDKEHHKGP--KDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHN-ERPEQNMQS 436
Query: 151 PH 146
H
Sbjct: 437 SH 438
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 307 QGPQD--HHRGPAPRHSEKHRRPKPTE 233
+GP+D HH+GP + E H+ PK E
Sbjct: 357 RGPEDKEHHKGP--KDKEHHKGPKDKE 381
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 319 QSREQGPQD--HHRGPAPRHSEKHRRPKPTE 233
+ +GP+D HH+GP + E H+ PK E
Sbjct: 362 KEHHKGPKDKEHHKGP--KDKEHHKGPKDKE 390
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 319 QSREQGPQD--HHRGPAPRHSEKHRRPKPTE 233
+ +GP+D HH+GP + E H+ PK E
Sbjct: 371 KEHHKGPKDKEHHKGP--KDKEHHKGPKDKE 399
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 307 QGPQDHHRGPAPRHSEKHRRPKPTE 233
+GP+ HHRGP + E H+ PK E
Sbjct: 351 EGPE-HHRGPEDK--EHHKGPKDKE 372
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 307 QGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRH 191
+G HH+G + K PKP + SV + E P+H
Sbjct: 151 KGKGKHHKGKHAKGKGKKSHPKPEDDSVFFDD--ERPKH 187
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 319 QSREQGPQDHHRGPAPRHSEKHRRPKPTELSV 224
QS G R P+PR R P P+ LS+
Sbjct: 337 QSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSI 368
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 286 RGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 143
R P+P H + R P E S RS +PR+R++ P RSP +
Sbjct: 116 RSPSP-HEARSRSPYNDERS---DRRSMSPRYRSRSRSPDGRSRSPDY 159
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/59 (27%), Positives = 19/59 (32%)
Frame = -2
Query: 313 REQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 137
R P H S P SV R +S+ RH S S+ HH H
Sbjct: 1253 RSSVPSPHSNASPSPTSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 460 SWRLSALLAKELELDHSRALSKSRLSSW 377
SW LS ++ KEL++ + L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = -2
Query: 316 SREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSET-PRHRNKPSRPVWSR----RS 152
S + P+ H R +PR R P P + RS R R++ SR SR RS
Sbjct: 108 SSHRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRS 167
Query: 151 PHHF 140
H +
Sbjct: 168 RHRY 171
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 280 PAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 149
PA +EK R KP R P HR P R VW + P
Sbjct: 66 PAKTSAEKKRGAKPQ------MRRVPIPPHRMTPLRNVWPKLYP 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,102
Number of Sequences: 5004
Number of extensions: 37585
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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