Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00600
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.57
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 0.75
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 31 1.00
01_06_1239 + 35652053-35654050 30 1.7
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 29 3.0
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 3.0
12_02_1275 - 27482784-27483272 28 5.3
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 5.3
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 28 7.0
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 9.3
06_03_0685 - 23499779-23500204 27 9.3
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 9.3
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 138 WKWCGLRRDQTGREG 182
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 31.1 bits (67), Expect = 0.75
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 313 REQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWS-RRSP 149
R P R PAPR S RR P + + RERS R+ + PV S RSP
Sbjct: 239 RRSPPARRERSPAPR-SRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPVRSIGRSP 293
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 319 QSREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRP 170
+SR P D P P ++H R P S ++RS + R+ + P P
Sbjct: 846 RSRSSQPADRSAPPPPASPDRHSRRSPHRSSGSGKKRSSSDRYDDLPLPP 895
>01_06_1239 + 35652053-35654050
Length = 665
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 280 PAPRHSEKHRRPKPTELSVCCRER--SETPRHRNKPSRPVWSRR 155
P+P S HRR T SV S P HR KP+ P R+
Sbjct: 18 PSPSSSSSHRRLPATAKSVWVNPSLPSSQPFHRRKPAEPQHQRQ 61
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -2
Query: 316 SREQGPQDHHRGPAPR----HSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWS 161
SR G R P+P S +H P+ S R RS PR R P R +WS
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPI-RRRSPLPRRRLTPPRRMWS 359
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 295 DHHR-GPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRR 155
DH++ GP+ + K + KP R+ + +PR R+ PSR V S R
Sbjct: 237 DHNKVGPSAEKATKQQPRKPASPQ---RKPAPSPRRRSPPSRRVESPR 281
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 233 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 141
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 135 QWKWCGLRRDQTGREG 182
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 277 APRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRS 152
AP+ S RP P S + R TP + +PS PV +R++
Sbjct: 122 APKQSIAASRPVPARSSTPVKTRPSTPT-KTRPSTPVRTRQT 162
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -2
Query: 286 RGPAPRHSEKHRRPKP-TELSVCCRER-----SETPRHRNKPSRP 170
R PA S H P P T L+V C +R S+ PR+RN P P
Sbjct: 40 RSPAAA-SVIHLSPPPVTPLAVACDDRHALPDSDEPRNRNPPDHP 83
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 135 QWKWCGLRRDQTGREG 182
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>06_03_0685 - 23499779-23500204
Length = 141
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 155 PSRPNRSRRFIPVTGRL*ALPAANAQLCR 241
P R R RR+ P GR+ LP ++CR
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR 70
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 135 QWKWCGLRRDQTGREG 182
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,329
Number of Sequences: 37544
Number of extensions: 307629
Number of successful extensions: 1062
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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