Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00600
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical...    29   3.6  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    29   3.6  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   4.8  
U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    27   8.4  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    27   8.4  

>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform c
            protein.
          Length = 1310

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 154  SVETKQVEKVYSGDGASLSAPGSKRSALSASDADVSRCAWAPGL 285
            S+ ++  E    G  +S+ +PGS     S  D  + R + APG+
Sbjct: 1184 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 1227


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 154  SVETKQVEKVYSGDGASLSAPGSKRSALSASDADVSRCAWAPGL 285
            S+ ++  E    G  +S+ +PGS     S  D  + R + APG+
Sbjct: 2330 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 2373


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 319 QSREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNK 182
           + +EQ    H+     R SE+ RR K +  S   R+R +  RH  +
Sbjct: 568 REKEQSSSRHNHRSRSRSSERDRRRKRSRSSERRRDRGDRDRHSRR 613


>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -2

Query: 607 VVHNSFPAYNCVFSEINRELNFNGVLVLALQDLFTTXXXXXXXCGDAWPSWRLSALLAKE 428
           +VHN   A NC+ +E+N  L          +DLF           +    W     +A E
Sbjct: 413 IVHNDIAARNCLIAEVNGRLQVQLCDSALSRDLFPADYHCLGDNENRPLKWMSPEAIANE 472

Query: 427 L 425
           L
Sbjct: 473 L 473


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/61 (26%), Positives = 23/61 (37%)
 Frame = -2

Query: 607 VVHNSFPAYNCVFSEINRELNFNGVLVLALQDLFTTXXXXXXXCGDAWPSWRLSALLAKE 428
           +VHN   A NC+ +E+N  L          +DLF           +    W     +A E
Sbjct: 434 IVHNDIAARNCLIAEVNGRLQVQLCDSALSRDLFPADYHCLGDNENRPLKWMSPEAIANE 493

Query: 427 L 425
           L
Sbjct: 494 L 494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,192
Number of Sequences: 27780
Number of extensions: 239911
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)