Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00600
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 332 GDRRGCEPRYPGHPQPRRQSRL 397
           G   GC+ R    P PR+Q  L
Sbjct: 165 GSSDGCDARKKKGPTPRQQEEL 186


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 350 EPRYPGHPQPRRQSRLAKGPAMVKLQLFGQQRRESP 457
           +PR P HP+ RR++ L   P   +     Q R   P
Sbjct: 79  QPR-PPHPRLRREAELEAEPGNNRPVYISQPRPPHP 113



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 350 EPRYPGHPQPRRQSRLAKGPAMVKLQLFGQQRRESP 457
           +PR P HP+ RR++ L   P   +     Q R   P
Sbjct: 135 QPR-PPHPRLRREAELEAEPGNNRPVYISQPRPPHP 169


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 289 HRGPAPRHSEKHRRPKPTELSVCCR 215
           H G   RH   H   +P + +VC +
Sbjct: 159 HSGKLHRHMRIHTGERPHKCTVCSK 183


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 475 GDAWPSWRLSALLAKELELD 416
           GD W SW     +  EL LD
Sbjct: 385 GDLWISWEEGMKVFDELLLD 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,257
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)