Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00600
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09060.1 68417.m01493 expressed protein                             29   2.5  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   2.5  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    29   3.4  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    29   3.4  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    29   3.4  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    29   3.4  
At1g27060.1 68414.m03299 regulator of chromosome condensation (R...    28   4.4  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    28   5.9  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    27   7.8  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    27   7.8  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    27   7.8  

>At4g09060.1 68417.m01493 expressed protein 
          Length = 341

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = -2

Query: 328 RAVQSREQGP---QDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWS 161
           R +  ++Q P    D +R  A   S K + PK     V  R    +P    KP  PVW+
Sbjct: 273 RKLLRQQQSPLCSADKNRNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKPLSPVWN 331


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -2

Query: 328 RAVQSREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRP 170
           R  Q R + P+   R P PR   K   P+PT         S TP+ R+K   P
Sbjct: 294 RTAQRRGRSPEFMERSPGPR--SKTPEPQPTYF----EPSSRTPKQRSKTPEP 340


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
 Frame = -2

Query: 292 HHRGPAPRHSEKHRRPKPTELSVCCRERSETP-----RHR--NKPSRPVWSRRSPHHFHC 134
           H R P P  +  H R  P  ++ C   R   P      HR    PS PV +     H HC
Sbjct: 22  HRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTTNTG--HRHC 79


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 301 PQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 137
           P  ++R P+      +R PK    S      S++ RH + PS   W     HH H
Sbjct: 463 PSGYNRSPSTHIGHNYRSPKFN--SGGHYPGSQSSRHHSGPSPSRWQPSHQHHHH 515


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 316 SREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSR 158
           SR  GP+   R P+PR S    R   + L    +E S++P   +    P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSR---SPLPSVQKEGSKSPSKPSPAKSPIHTR 299


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 316 SREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSR 158
           SR  GP+   R P+PR S    R   + L    +E S++P   +    P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSR---SPLPSVQKEGSKSPSKPSPAKSPIHTR 299


>At1g27060.1 68414.m03299 regulator of chromosome condensation
           (RCC1) family protein low similiarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 386

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 205 LSAPGSKRSALSASDADVSRCAWAPGLCGGPEV 303
           +SA G   +A+SA   D    +W  G CGGP+V
Sbjct: 211 ISANGDHSAAISA---DGQFFSWGRGFCGGPDV 240


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -2

Query: 286 RGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 143
           RG     +E +R P+          R ETPR         WSR+  HH
Sbjct: 298 RGRREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -2

Query: 319 QSREQGPQDHHRGPAPRHSEKHR---RPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 149
           Q R + P  + R P PR   + R   R   +  +   + RS +P+ R       +SR  P
Sbjct: 136 QDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPP 195

Query: 148 HH 143
           H+
Sbjct: 196 HN 197


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -2

Query: 319 QSREQGPQDHHRGPAPRHSEKHRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 140
           +   QG ++  R  A    ++ R P     S   +ER+  P+  ++ +R    RR  HH 
Sbjct: 408 EKERQGERERERKRA-LEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHR 466

Query: 139 HCSI 128
             SI
Sbjct: 467 EASI 470


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 248 TPMFLAVPGRRASVVVLRSLLTALHRPEGDRRGC 349
           T   L   G + SV+    LLT  H  EG RRGC
Sbjct: 133 TFQLLGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,339
Number of Sequences: 28952
Number of extensions: 221647
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)