Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00597X
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 135 3e-33
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 129 1e-31
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.34
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 28 0.59
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 27 0.77
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 1.4
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 1.4
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 26 2.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.1
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 24 9.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 9.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 24 9.5
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.5
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 135 bits (326), Expect = 3e-33
Identities = 58/83 (69%), Positives = 71/83 (85%)
Frame = +1
Query: 10 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 189
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 190 MFQLPKLYAKLHYCVSCAIHSKL 258
+ +PKLY KL YCVSCAIHS++
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRV 83
Score = 29.1 bits (62), Expect = 0.25
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 252 QVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 350
+VVR RS++ RRIRT PP+ + RD + P AV +
Sbjct: 82 RVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 129 bits (312), Expect = 1e-31
Identities = 55/83 (66%), Positives = 70/83 (84%)
Frame = +1
Query: 10 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 189
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 190 MFQLPKLYAKLHYCVSCAIHSKL 258
+ +PK+Y KL YCVSCAIH+++
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARV 83
Score = 29.9 bits (64), Expect = 0.15
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +3
Query: 252 QVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 350
+VVR RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 82 RVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.34
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 91 RCVPKDKAIKKFVIRNIVEAAAVRDI 168
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.9 bits (59), Expect = 0.59
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -1
Query: 150 RFYDVPNHELFDSLVLWHAPRAVCASHSFNVTTSMLGASS 31
+ +DV + +L + + L P+A+C +S ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 0.77
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +1
Query: 130 IRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKLSGTDRRKTEESVLLPRV 309
+ N ++ + D N+ +Y +L K+Y + SC +H+ + G + + + + P
Sbjct: 34 LSNSLDLSKTPDYNNVQLYGFIRL-KIYKYVVLVTSCDLHAAILGNNIYRARKFAIFPIT 92
Query: 310 TSL 318
+L
Sbjct: 93 RTL 95
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 317 REVTLGRSTDSSVFLRSVPDNLLWMAH 237
R TL T VFLR V + LLW H
Sbjct: 369 RNNTLPLLTTKRVFLRGVLEELLWFIH 395
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 205 KLYAKLHYCVSCAIHSKLSGTDRRKTEESVL 297
+L+ +L CV +H+K+S TD + E +L
Sbjct: 3062 ELFYRLSNCVEKVLHNKISITDLKTEYEEIL 3092
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 237 MRHPQQVVRNRSKKDRRIRTPPKSNFPRDMSR 332
MR+ + + + IRTP KS FP+D ++
Sbjct: 140 MRYKKNLTKISKNHHSIIRTPKKSYFPKDHAK 171
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 256 LSGTDRRKTEESVLLPRVTSLGT 324
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -1
Query: 75 SHSFNVTTSMLGASSITAL---TSHVSN 1
+ FN+ TS +SS+T+ +SH+SN
Sbjct: 97 ARDFNILTSNFASSSVTSAPTQSSHISN 124
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 156 RRRFYDVPNHELFDSLVLWHAPRA 85
R F +V N L +S+ ++H PRA
Sbjct: 363 RNAFLNVANKYLPNSVCIYHVPRA 386
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.8 bits (49), Expect = 9.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 382 YFIIYLIINHFLCTACGRDMS 320
Y ++ +++H+L CG+D+S
Sbjct: 165 YGHLHCVLDHYLIIFCGQDLS 185
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 23.8 bits (49), Expect = 9.5
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 85 CARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 180
C R P KA+ +RN +E A I D +
Sbjct: 1214 CCRSSPMQKALMVQKVRNTLEKAVTLAIGDGA 1245
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 4 RNMTRKRRNGGRAKHG 51
R R RR GRAKHG
Sbjct: 378 REARRMRRRQGRAKHG 393
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,512,458
Number of Sequences: 5004
Number of extensions: 27614
Number of successful extensions: 74
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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