Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00596
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    27   2.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   3.7  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       25   6.4  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   6.4  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 28  RPYSYPCPGASCKWQGGLDQVMPHLMMSH--KSITTLQGEDIVFL 156
           +PYS PC     +W+GG + V      S   K I  L+ ED   L
Sbjct: 92  QPYSGPCVPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSEDYTVL 136


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +1

Query: 124 TTLQGEDIVFLATDINLPGAVDWVMMQSCFNHHFMLVLEKQEKLMVTSSSLQSCNL*DLV 303
           TT+  E   F+ TD  L G  DW +   C N H   ++     +        +  L +  
Sbjct: 210 TTVGNE--AFIRTD-QLDGETDWKLRIPCSNQHTEGIVHADAPIKSVHHFYGTFTLNNQK 266

Query: 304 KKLKTLHTDWS*TV 345
           + +   HT W+ TV
Sbjct: 267 RPISVDHTLWANTV 280


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -2

Query: 396 LLREWI*ALPPTLA---DACDRSTPIGMQSFQL-LYEIL*VARLQRTAGDHQFFLFF 238
           L + W+  + P L    D  DR+  IG QSFQ+ + +   VA       D  +F  F
Sbjct: 240 LQKGWLNEVQPNLLSIEDPIDRNNDIGKQSFQISMIKAAFVASANELLSDKTWFSTF 296


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 467 WQPWYKCHNIYCLTMFLFTIYVS*NSCIR 553
           W P+ + H  YC T   F+I     SC +
Sbjct: 257 WTPFSELHYFYCATPITFSIASKILSCCK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,532
Number of Sequences: 5004
Number of extensions: 49720
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)