Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00596
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 50 1e-06
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 48 6e-06
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 48 6e-06
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 45 4e-05
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 43 2e-04
06_02_0097 + 11710560-11710859,11712605-11713270 31 0.53
11_06_0321 - 22341267-22342565 30 1.2
01_01_0137 + 1249081-1249341,1249500-1250237 30 1.6
01_06_1744 - 39606413-39607387 29 3.8
05_01_0382 + 2985526-2986659 28 5.0
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901 28 5.0
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 6.6
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 8.7
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA NF Y LE+ G+ R+LTW+ +PRSI + + D L ++A
Sbjct: 226 YMAFLRFMGEDSEARNFCYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSFDGLIIHRNMA 285
Query: 450 QLFADNGN 473
LF GN
Sbjct: 286 -LFFSGGN 292
Score = 44.8 bits (101), Expect = 5e-05
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITTLQGEDIVFLATDINLPGA 183
+HEE C FRPYS P G+ C G + ++ HL+ HK + +G N P
Sbjct: 136 KHEELCRFRPYSCPYAGSECLIAGDVPMLVSHLINDHK-VDLHEGCTFNHRYVKSN-PYE 193
Query: 184 VD---WVM-MQSCFNHHFMLVLE 240
V+ W++ + CF HF L E
Sbjct: 194 VENATWMLTVFKCFGQHFCLHFE 216
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA+N++Y LE+ G R++TW+ +PRSI + + D L ++A
Sbjct: 611 YIAFLRFMGDDAEAKNYSYSLEVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMA 670
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 671 LFFSGGDKKELKLRVT 686
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITTLQGEDIVFLATDINLPGA 183
+HE C++RPY+ P G+ C G + ++ HL HK + G N P
Sbjct: 521 KHESQCQYRPYTCPYAGSECTVAGDIQYLVSHLKDDHK-VDMHNGSTFNHRYVKSN-PHE 578
Query: 184 VD---WVM-MQSCFNHHFMLVLE 240
V+ W++ + SCF +F L E
Sbjct: 579 VENATWMLTVFSCFGQYFCLHFE 601
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA N+ Y LE+ G+ R++ WE PRSI + + D L ++A
Sbjct: 266 YMAFLRFMGDENEARNYTYSLEVGGNGRKMVWEGTPRSIRDSHRKVRDSHDGLIIQRNMA 325
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 326 LFFSGGDRKELKLRVT 341
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPY+ P G+ C G + ++ HL HK
Sbjct: 176 KHEAQCSFRPYNCPYAGSECAVAGDIPFLVAHLRDDHK 213
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA N++Y LE+ + R++ WE PRS+ + + D L ++A
Sbjct: 252 YMAFLRFMGDENEARNYSYSLEVGANGRKMVWEGTPRSVRDSHRKVRDSHDGLIIQRNMA 311
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + +T
Sbjct: 312 LFFSGGDRKELKLRIT 327
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPY+ P G+ C G + ++ HL HK
Sbjct: 162 KHEAQCMFRPYNCPYAGSECAVVGDIPYLVAHLRDDHK 199
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G +A N++Y LE+ + R++ WE PRSI + + D L ++A
Sbjct: 272 YMAFLRFMGDENDARNYSYSLEVGANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMA 331
Query: 450 QLFA 461
F+
Sbjct: 332 LFFS 335
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPY+ P G+ C G + ++ HL HK
Sbjct: 182 KHESQCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHK 219
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKS 120
HEEAC F P CP ++C ++G + H + SH S
Sbjct: 164 HEEACLFAPSV--CPISNCGYRGFTGRWSGHFLTSHSS 199
>11_06_0321 - 22341267-22342565
Length = 432
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 126 NTPRRRYSVLSYGHQPARCGGLGDDAVMLQSSFYVSFRKT 245
N+PR + S+G + GG+GD+ + + Y S KT
Sbjct: 221 NSPRCLFGSASFGEKAIVAGGIGDNGTLSSAELYDSEAKT 260
>01_01_0137 + 1249081-1249341,1249500-1250237
Length = 332
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 AEHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK-SITTL 132
AEH+ AC P S P PG C ++G ++ H H S+T +
Sbjct: 146 AEHQRACPCAPCSCPDPG--CGFRGSPAALLGHFATDHPWSVTQI 188
>01_06_1744 - 39606413-39607387
Length = 324
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 297 SRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFD 437
+R+ A YR E++GHRR +T + G+S +I S G D
Sbjct: 32 ARQSAVTLVYRAEISGHRRLVTVTWCRNLLTHGLSVSIEGSAGNGKD 78
>05_01_0382 + 2985526-2986659
Length = 377
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSH 114
H AC P CPG SC + G ++ H +H
Sbjct: 208 HRRACPHAPCR--CPGESCGFAGSTAALLDHFAAAH 241
>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
Length = 623
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 109 SHKSITTLQGEDIVFLATDINLPGAVDWVMMQSC 210
SH +++ G +VFL + P AVD +MQ+C
Sbjct: 507 SHADVSSDPGHYVVFLELNAADPAAVDGDVMQAC 540
>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 436 SNPRQSEFMMADDTPS*MDLGIASHVSRRL*PFNSNRYA 320
SN + + +M + PS ++G A HV P N N A
Sbjct: 1052 SNDPRFQLLMQQNVPSHQNVGFAEHVQDAFNPMNDNYLA 1090
>12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 436 SNPRQSEFMMADDTPS*MDLGIASHVSRRL*PFNSNRYA 320
SN + + +M + PS ++G A HV P N N A
Sbjct: 995 SNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYLA 1033
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,031
Number of Sequences: 37544
Number of extensions: 338819
Number of successful extensions: 794
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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