Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00596
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43575| Best HMM Match : Sina (HMM E-Value=0)                       175   2e-44

>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score =  175 bits (427), Expect = 2e-44
 Identities = 77/84 (91%), Positives = 79/84 (94%)
 Frame = +1

Query: 1   AEHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITTLQGEDIVFLATDINLPG 180
           AEHEE+CEFRPYS PCPGASCKWQG LD VMPHLM +HKSITTLQGEDIVFLATDINLPG
Sbjct: 111 AEHEESCEFRPYSCPCPGASCKWQGSLDAVMPHLMHTHKSITTLQGEDIVFLATDINLPG 170

Query: 181 AVDWVMMQSCFNHHFMLVLEKQEK 252
           AVDWVMMQSCF HHFMLVLEKQEK
Sbjct: 171 AVDWVMMQSCFGHHFMLVLEKQEK 194



 Score =  151 bits (366), Expect = 4e-37
 Identities = 73/105 (69%), Positives = 86/105 (81%), Gaps = 4/105 (3%)
 Frame = +3

Query: 198 DAVMLQSSFYVSF----RKTRKIDGHQQFFAIVQLIGSRKEAENFAYRLELNGHRRRLTW 365
           D VM+QS F   F     K  K +GHQQF+AIVQLIG+RK+AE+F YRLELNG+RRRL W
Sbjct: 173 DWVMMQSCFGHHFMLVLEKQEKYEGHQQFYAIVQLIGTRKQAESFIYRLELNGNRRRLAW 232

Query: 366 EAMPRSIHEGVSSAIMNSDCLGFDTSLAQLFADNGNLGINVTISI 500
           EA PRSIHEG++SAI+NSDCL FD ++A LFADNGNLGINVTIS+
Sbjct: 233 EATPRSIHEGIASAILNSDCLVFDANIAHLFADNGNLGINVTISM 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,433
Number of Sequences: 59808
Number of extensions: 407734
Number of successful extensions: 988
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)