Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00596
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.75 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 330 LELNGHRRRLTWEAMPRSIHEG 395
           ++LN HR +++W     ++ EG
Sbjct: 94  MDLNAHREQMSWPVKKEAVVEG 115


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 14   KLVNSGRTLILVPGHPASGKVVLIK 88
            KLV+ G+   L+ GH   G+ + IK
Sbjct: 1026 KLVSPGQIKSLLTGHGLQGQTIFIK 1050


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 215 LKHDCIITQSTAPGRLMSVAKNTI 144
           + HD  +  +T  GRL S+A  ++
Sbjct: 170 IPHDVAVNATTGKGRLSSLAVQSL 193


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 215 LKHDCIITQSTAPGRLMSVAKNTI 144
           + HD  +  +T  GRL S+A  ++
Sbjct: 170 IPHDVAVNATTGKGRLSSLAVQSL 193


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 215 LKHDCIITQSTAPGRLMSVAKNTI 144
           + HD  +  +T  GRL S+A  ++
Sbjct: 170 IPHDVAVNATTGKGRLSSLAVQSL 193


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 222  FYVSFRKTRKIDGHQQFFAIVQLIGSRKEAENFAYRLELNGHRR 353
            FYV    T   D +Q    I+Q  G   + +  AY L L    R
Sbjct: 1069 FYVCGDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDENR 1112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,343
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)