Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00596
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13672.2 68416.m01724 seven in absentia (SINA) family protein... 52 3e-07
At3g13672.1 68416.m01723 seven in absentia (SINA) family protein... 52 3e-07
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 51 5e-07
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 51 7e-07
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 48 4e-06
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 47 8e-06
At5g53360.1 68418.m06631 seven in absentia (SINA) family protein... 46 3e-05
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic... 35 0.036
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 31 0.77
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.3
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 1.3
At5g37900.1 68418.m04566 seven in absentia (SINA) family protein... 29 1.8
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 29 2.4
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 29 3.1
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 28 4.1
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 28 4.1
At5g61260.1 68418.m07687 chromosome scaffold protein-related con... 28 5.4
At3g23490.1 68416.m02959 cyanate lyase family contains Pfam prof... 28 5.4
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 27 7.2
At5g48130.1 68418.m05945 phototropic-responsive NPH3 family prot... 27 9.5
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf... 27 9.5
At5g17310.1 68418.m02027 UTP--glucose-1-phosphate uridylyltransf... 27 9.5
>At3g13672.2 68416.m01724 seven in absentia (SINA) family protein
low similarity to SP|P21461 Developmental protein seven
in absentia {Drosophila melanogaster}; contains Pfam
profile PF03145: Seven in absentia protein family
Length = 220
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A +Q +G +EA +F+Y L++ G+ R+LTW+ +PRSI + + + D L LA
Sbjct: 131 YMAFMQFMGDEEEAMSFSYSLQVGGNGRKLTWQGVPRSIRDSHKTVRDSQDGLIITRKLA 190
Query: 450 QLFADNGN 473
F+ + N
Sbjct: 191 LFFSTDNN 198
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSH 114
+H E + +PY+ P GA C G + +++ HL H
Sbjct: 41 DHIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDH 77
>At3g13672.1 68416.m01723 seven in absentia (SINA) family protein
low similarity to SP|P21461 Developmental protein seven
in absentia {Drosophila melanogaster}; contains Pfam
profile PF03145: Seven in absentia protein family
Length = 216
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A +Q +G +EA +F+Y L++ G+ R+LTW+ +PRSI + + + D L LA
Sbjct: 127 YMAFMQFMGDEEEAMSFSYSLQVGGNGRKLTWQGVPRSIRDSHKTVRDSQDGLIITRKLA 186
Query: 450 QLFADNGN 473
F+ + N
Sbjct: 187 LFFSTDNN 194
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSH 114
+H E + +PY+ P GA C G + +++ HL H
Sbjct: 37 DHIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDH 73
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA+ F+Y LE+ H R+LTW+ +PRSI + + D L +LA
Sbjct: 223 YMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLA 282
Query: 450 QLF--ADNGNLGINVT 491
F +D L + VT
Sbjct: 283 LYFSGSDKEELKLRVT 298
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE+ C FR YS P G+ C G + ++ HL HK
Sbjct: 133 KHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHK 170
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA+ F+Y LE+ H R+LTW+ +PRSI + + D L +LA
Sbjct: 226 YMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLA 285
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 286 LYFSGGDRQELKLRVT 301
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE+ C FRPY+ P G+ C G + ++ HL HK
Sbjct: 136 KHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHK 173
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G ++A +++Y LE+ G R+LTWE PRSI + ++D L ++A
Sbjct: 230 YMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMA 289
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 290 LFFSGGDRKELKLRVT 305
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPYS P G+ C G + ++ HL HK
Sbjct: 140 KHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHK 177
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G EA N+ Y LE+ G+ R+L WE PRS+ + + D L ++A
Sbjct: 229 YMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMA 288
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 289 LFFSGGDRKELKLRVT 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPYS P G+ C G + ++ HL HK
Sbjct: 139 KHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHK 176
>At5g53360.1 68418.m06631 seven in absentia (SINA) family protein
low similarity to siah-1A protein [Mus musculus]
GI:297035; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 233
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 270 FFAIVQLIGSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSAIMNSDCLGFDTSLA 449
+ A ++ +G +A N+ Y LE+ G R+ TWE PRS+ + + D L ++A
Sbjct: 136 YMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMA 195
Query: 450 QLFA--DNGNLGINVT 491
F+ D L + VT
Sbjct: 196 LFFSGGDKKELKLRVT 211
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 4 EHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
+HE C FRPYS P G+ C G + ++ HL HK
Sbjct: 46 KHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHK 83
>At2g37980.1 68415.m04662 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 638
Score = 35.1 bits (77), Expect = 0.036
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 120 YHNTPRRRYSVLSYGHQPARCGGLGDDAVMLQSSFYVSFRKT-RKIDGHQQFFAIVQLIG 296
YH+ P RY +L P G+G AV+ Q + S R R+I G F +V L
Sbjct: 89 YHHHPTIRYFLLRKLRLPFLFDGVGSTAVVGQGWWLCSGRNVGRRILGLLMIFVVVSLF- 147
Query: 297 SRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVSSA 407
+ R+ + HRR L + R++HE S A
Sbjct: 148 --LRVSLMSGRVVDHAHRRDLNELVVMRALHEDWSMA 182
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 30.7 bits (66), Expect = 0.77
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITT 129
HE+ C F P S CP C + G + H ++H + +T
Sbjct: 122 HEKICNFSPCS--CPVQGCNYTGSYKDLYEHYDLTHSTGST 160
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 294 GSRKEAENFAYRLELNGHRRRLTW 365
G+ K AE + RL +NG R +LTW
Sbjct: 275 GAEKAAEELSNRLVVNGQRLKLTW 298
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 294 GSRKEAENFAYRLELNGHRRRLTWEAMPRSIHEGVS 401
G+ K A+ + RL +NG R +LTW P+ +G +
Sbjct: 275 GAEKAAQELSNRLVINGQRLKLTW-GRPKPDQDGAN 309
>At5g37900.1 68418.m04566 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 241
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKS 120
HEE C F S CP C++ G + + H ++H S
Sbjct: 80 HEEECIFSLCS--CPSLDCEYSGRYEDLYDHYKLTHIS 115
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +1
Query: 1 AEHEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITTLQGEDIVFLATDI 168
+ HE+ C + S CP C + G + + H M H +T+ + D+
Sbjct: 120 SSHEKECNYSQCS--CPNLECNYTGSYNIIYGHFMRRHLYNSTIVSSKWGYSTVDV 173
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHK 117
HE+ C F P S CP C + G + H+ HK
Sbjct: 190 HEQVCVFTPCS--CPILDCHYTGYYKDLNNHVRAEHK 224
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKS 120
HE CEF Y CP CK+ G + H HK+
Sbjct: 128 HERVCEFT-LCY-CPEPECKYTGVYTDLYRHYHAEHKT 163
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 7 HEEACEFRPYSYPCPGASCKWQGGLDQVMPHLMMSHKSITT 129
HE+ C F Y CP +C + G + H +HK + T
Sbjct: 198 HEKKCSFA-LCY-CPAPNCNYAGVYKDLYSHYAANHKKLWT 236
>At5g61260.1 68418.m07687 chromosome scaffold protein-related
contains weak similarity to chromosome scaffold protein
p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
Length = 496
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 298 LVKKLKTLHTDWS*TVTGVG*RGRQCLDPFTKECHRPS*TQTAWG 432
+VKK+ L TD S T TGVG + C K + TQT G
Sbjct: 216 VVKKVPALRTDKSSTSTGVG-SSKVCAPKNLKNVEKAKTTQTISG 259
>At3g23490.1 68416.m02959 cyanate lyase family contains Pfam
profile: PF02560 cyanate lyase C-terminal domain
Length = 168
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 198 DAVMLQSSFYVSFRKTRKIDGHQQFFAIVQ---LIGSRKEAENFAYRLELNG 344
D +M FY S K + +DG+ + + L S + EN RL L G
Sbjct: 113 DGIMSAIDFYCSVDKIKGVDGNNRVVVTLDGKYLSHSEQRTENMVSRLNLKG 164
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 350 PVTVQLQSVCKVFSFFTRSYKLHDCKELLVTINFS 246
P T + QSVC+V S F+ ++ + K +T+ F+
Sbjct: 1276 PETEEFQSVCRVMSGFSDAFYIEVMKSSTLTLLFN 1310
>At5g48130.1 68418.m05945 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 625
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = -3
Query: 350 PVTVQLQSVCKVFSFFTRSYKLHDCKELLVTINFSCFSKTNIK**LKHDCIITQSTA 180
P+ +Q + F + S+++H+ +E LV++ S S N+K K +C+ +S +
Sbjct: 518 PLCFLMQKDATLDEFESTSFRIHNLEEQLVSLKKSLHSHDNLK---KPNCLGKRSAS 571
>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
uridylyltransferase, putative / UDP-glucose
pyrophosphorylase, putative / UGPase, putative strong
similarity to SP|P19595 UTP--glucose-1-phosphate
uridylyltransferase (EC 2.7.7.9) (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
contains Pfam profile PF01704: UTP--glucose-1-phosphate
uridylyltransferase
Length = 470
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 16 ACEFRPYSYPCPGASCK---WQGGLDQVMPHLMMSHKSITTL-QGEDIVFLATDINLPGA 183
A EF P+ P G + K + G V P LM S K L QG++ VF+A NL
Sbjct: 171 ADEFVPW--PSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAI 228
Query: 184 VD 189
VD
Sbjct: 229 VD 230
>At5g17310.1 68418.m02027 UTP--glucose-1-phosphate
uridylyltransferase, putative / UDP-glucose
pyrophosphorylase, putative / UGPase, putative strong
similarity to SP|P19595 UTP--glucose-1-phosphate
uridylyltransferase (EC 2.7.7.9) (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
contains Pfam profile PF01704: UTP--glucose-1-phosphate
uridylyltransferase
Length = 390
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 16 ACEFRPYSYPCPGASCK---WQGGLDQVMPHLMMSHKSITTL-QGEDIVFLATDINLPGA 183
A EF P+ P G + K + G V P LM S K L QG++ VF+A NL
Sbjct: 91 ADEFVPW--PSKGKTDKDGWYPPGHGDVFPSLMNSGKLDAFLSQGKEYVFIANSDNLGAI 148
Query: 184 VD 189
VD
Sbjct: 149 VD 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,350,045
Number of Sequences: 28952
Number of extensions: 265978
Number of successful extensions: 543
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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