Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00593
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    35   0.010
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    29   0.87 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.6  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   8.1  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 347  VSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAK 502
            V L S+   PP  +   + P  +  +K+DPL +I +A P P +    G T+K
Sbjct: 1935 VPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSK 1986


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +2

Query: 221 LFIIGEAINFV*TPMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLI--GKPPPESRK 394
           +F  G+   F  TP+  R        +R P+ +   S  P+ V++P  +  GK    S+ 
Sbjct: 6   MFSYGKENAFPVTPISNRNGTKGAGSKRAPLGSTKQSNAPSSVTVPRTVLGGKSTNISKF 65

Query: 395 PRAPAFTFGQKLDPLANIAKAGPGPASYNTEGMTAKA 505
             AP+    +K+ P+ +I+   P     N++G++  A
Sbjct: 66  ISAPS---TKKMSPM-DISMDSPTILEPNSQGISRSA 98


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 337 TSRSISPFPYR*TASRIEETKSSSFYFR 420
           T+ SI PFP    +S  +E KSS+F FR
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFR 209


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 561 LFYSLLSFAKYRWHRISMGALAVIPSVL 478
           LF +L +FAK  W+   M  LAV PSVL
Sbjct: 464 LFPTLRNFAKKSWYEKLMDVLAV-PSVL 490


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 470 ASYNTEGMTAKAPILILCHRYLAKERRE 553
           A  N EG+TAK  +L+ C R  A    E
Sbjct: 116 ADINEEGLTAKEGLLLWCQRKTANYHPE 143


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +2

Query: 260 PMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPP-ESRKPRAPAFTFGQ 424
           PMG    P  P     PIA    +  PA   LP     PPP  +  P AP  +  +
Sbjct: 440 PMGAPAAP--PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAE 493


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 330 LEASAAIGPLRFVGVHGFWRTPIGVYTKLIASPIMKR 220
           ++   +IG  R V    F  TPI VY K +   + KR
Sbjct: 15  VDTIGSIGVCRVVRFTTFHNTPIEVYNKKVNDGVWKR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,918
Number of Sequences: 5004
Number of extensions: 61172
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)