Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00593
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_28332| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   32   0.53 
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)                    31   1.2  
SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)               30   2.1  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   2.8  
SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             29   4.9  
SB_59096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                    28   8.6  
SB_33440| Best HMM Match : MORN (HMM E-Value=6.6e-24)                  28   8.6  
SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)                 28   8.6  

>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/68 (36%), Positives = 34/68 (50%)
 Frame = +2

Query: 293 TKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPA 472
           T++   IAA+   PGPA   LP  +GK   + RK   PAF+FGQ+        +  PGP 
Sbjct: 131 TEKEITIAAKCRGPGPAKYLLPGTVGKKNHDVRKTTNPAFSFGQRHRDF--FTQISPGPK 188

Query: 473 SYNTEGMT 496
                G+T
Sbjct: 189 YMVPSGLT 196



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 308 PIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQK-LDPLANIAKAGP 463
           PI A    PGP    LP+       +  + R PAF+FG K +  L N    GP
Sbjct: 14  PIGAIFRGPGPGRYMLPTTCNYNMHDVTRNRRPAFSFGNKHMHALTNDCSPGP 66



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 552 SKRAAPAFSITGR---GKFSEAKGLMPDPGTY 638
           +K +A A+S+TGR   G FSE     P PGTY
Sbjct: 274 NKTSAAAYSLTGRSNNGGFSEDLQKTPGPGTY 305


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/59 (40%), Positives = 30/59 (50%)
 Frame = +2

Query: 296 KRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPA 472
           ++R  IAA    PGPA   LP   G    + RK + PA++FG KL         GPGPA
Sbjct: 324 QKRPQIAAMFRGPGPAKYRLPGGCGYNDHDPRKHKKPAWSFGLKLG--LKSQNVGPGPA 380



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 522 ATGTWR--RKEGSKRAAPAFSITGRGKFSEAKGLMPDPGTYTTDR 650
           A GT++    + +K+  PA+S+ GR   +    L P PG ++ ++
Sbjct: 414 APGTYKVHNPDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEK 458


>SB_28332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +2

Query: 287 TPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRK--PRAPAFTFGQKLDPLANIAKAG 460
           TP  +  P   E S  G   +S+   I K    SRK  P  PAF     L+   NI    
Sbjct: 34  TPGIKSPPFGCEGSEEGKDKISIAQQIEKGNRGSRKEKPVLPAFRSNDSLNNTKNITTQA 93

Query: 461 PGPASYN 481
              ASYN
Sbjct: 94  VYSASYN 100


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 260 PMGVRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAP 406
           P+  R+ P  P K   P AAE +     +   P   GKPPP+ ++ + P
Sbjct: 385 PVYSREQPSAPMKSSWPTAAELAQNRAKLNGQPK-YGKPPPQPKRQKKP 432


>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
          Length = 520

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 472 FLQYRRNDC*STHTYSMPPVLGEGKKGVKELHRLSVSQVVESFLKLKD 615
           F   RR DC   H+ S+P   GEG      +HR+S + V ES  K  D
Sbjct: 67  FNYLRREDC-VVHSGSLPCTTGEGGAAKNTVHRISTA-VYESLGKAPD 112


>SB_42712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +2

Query: 296 KRRGPIA-AEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPA 472
           +R GP A A AS  GP   +   L G           P    G++L P A+   +  GP 
Sbjct: 187 ERLGPTAHAPASITGPVGYADEGL-GPTAHAPASITGPVGYAGERLGPTAHAPASNTGPV 245

Query: 473 SYNTEGM--TAKAPILI 517
            Y  EG+  TA AP  I
Sbjct: 246 GYAGEGLGPTAHAPASI 262



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +2

Query: 296 KRRGPIA-AEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPA 472
           +R GP A A AS+ GP   +   L G           P    G+ L P A+   +  GP 
Sbjct: 229 ERLGPTAHAPASNTGPVGYAGEGL-GPTAHAPASITGPVGYAGEGLGPTAHAPASITGPV 287

Query: 473 SYNTEGM--TAKAPILI 517
            Y  EG+  TA AP  I
Sbjct: 288 GYAGEGLGPTAHAPASI 304


>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
          Length = 97

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 540 RKEGSKRAAPAFSITGR---GKFSEAKGLMPDPGTYTT 644
           RK  +K ++ ++S+TGR   G FSE     P PG Y T
Sbjct: 36  RKLPNKYSSASYSMTGRATTGSFSEDLAKAPGPGKYNT 73


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 308 PIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGP 469
           P   EA +P P V    S+   PPP  R P  P+        P +   +A P P
Sbjct: 90  PAGVEAPTPTPMVAQ--SVAPTPPPPPRAPETPSQAPSPPPPPTSPATRAPPPP 141



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/56 (37%), Positives = 23/56 (41%)
 Frame = +2

Query: 308 PIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPAS 475
           PIA     P P     P+  G PPP    P APA T      P   +A A P P S
Sbjct: 143 PIAPATGGPPPPPPIAPATGGPPPP---PPIAPAATVPA---PAVPLAAASPPPPS 192


>SB_11736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +1

Query: 394 TKSSSFYFRTEAR----SSC*YSKGWTWTCFLQYRRNDC*STHTY 516
           T S+  Y++TE R    +   Y    TWTC  QY  + C   H Y
Sbjct: 146 TGSNVKYYKTEIRRDDTTKDRYYYALTWTCQFQYSNDTCYFAHCY 190


>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 296 KRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKL 430
           +R  P +  A +  PA+++ P+L+G+  P+  +  AP+   G+ +
Sbjct: 565 QRAPPRSKRAVTGNPAMMNRPNLVGRGRPQRPQSHAPSMYNGKSI 609


>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 481

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 388 RFWRRFTYKGRERYYGWSRTGS----FSSYWPSSFCWSPWVLANAHRSLHEIDCFTN 230
           R W R + K RE ++  S T +    FS  +  S  W+P+V+ +  ++  EI   TN
Sbjct: 268 RKWNRASAKNRESHHMRSETRTAKIVFSVLFVFSVAWTPYVIVHLLQASPEITLPTN 324


>SB_59096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 269 VRQNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDP-LAN 445
           VR+ P T   RR   AA AS+   ++   P   G PPP +    +   T   +L+P L +
Sbjct: 7   VRRRPPTRNARRS--AAVASATDESLFGSPLAPGSPPPLTAMDDSYTVTIQVELNPDLPD 64

Query: 446 IAKAGPGPASYNTE 487
           +++ G   +  + E
Sbjct: 65  LSRKGTRDSDMSDE 78


>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 275 QNPWTPTKRRGPIAAEASSPGPAVVSLPSLIGKPPPESRKPRA 403
           ++P TP   +  +++   SPG    S PS +   PP  ++P A
Sbjct: 516 ESPKTPASPKAGLSSPPGSPGGGATSAPSNV--VPPRQQQPAA 556


>SB_33440| Best HMM Match : MORN (HMM E-Value=6.6e-24)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 382 WRRFTYKGRERYYG-WSRTGSFSSY 311
           W+RFTY G + Y G WS  G    Y
Sbjct: 8   WQRFTYPGGDIYEGEWSEEGRKHGY 32


>SB_32128| Best HMM Match : Collagen (HMM E-Value=0.31)
          Length = 330

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +2

Query: 296 KRRGPIA-AEASSPGPAVVSLPSLIGKPPPESRKPRAPAFTFGQKLDPLANIAKAGPGPA 472
           +R GP A A AS  GP V      +G           P    G+ L P A+   +  GP 
Sbjct: 200 ERLGPTAHAPASITGP-VGYADERLGPTAHAPASITGPVGYAGEGLGPTAHAPASITGPV 258

Query: 473 SYNTEGM--TAKAPILI 517
            Y  EG+  TA AP  I
Sbjct: 259 GYAGEGLGPTAHAPASI 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,723,579
Number of Sequences: 59808
Number of extensions: 454719
Number of successful extensions: 1951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)