BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00591 (703 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 29 0.49 SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.64 SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 28 1.5 SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.0 SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 27 3.4 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 6.0 SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 25 7.9 SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 7.9 >SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 448 Score = 29.5 bits (63), Expect = 0.49 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -3 Query: 593 SMNIGVHSEIFCFWNFPYSWKISLG-IRKSHYIAAILLDHPTHVVGNGFPYQYILA 429 S+NI + S ++ S G ++ SHY+A L+HPT NG PY + + Sbjct: 339 SLNIYLFSAFLAINGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNG-PYTQLFS 393 >SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 29.1 bits (62), Expect = 0.64 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = -1 Query: 169 HLDTAIAVPGQLVALYVLSDAVLAVA*RSAG*TSGTK---PEQRTAPELN 29 H D IAVPG L+ + D L A R G G+K PE T E+N Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354 >SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosaccharomyces pombe|chr 3|||Manual Length = 1140 Score = 27.9 bits (59), Expect = 1.5 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = +2 Query: 185 RQVLQTIRFFLRKSTT----CSSIQTEDVRSVTNPENNEASIEHSHHTVDT 325 R V++ IR + K T SS+QTE R N+E IE TV++ Sbjct: 823 RPVIEEIRIYREKIQTETQRLSSLQTELSRLRDEKRNSEVDIERHRQTVES 873 >SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 680 Score = 27.5 bits (58), Expect = 2.0 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -3 Query: 554 WNFPYSWKISLGIRKSHYIAAILLDHPTHVVGNGFPYQYILAW 426 WN Y + +G + YIA LLD + + FP + + W Sbjct: 605 WNMAYMHEYGIGRDQDIYIARRLLDELSSNQNSYFPLKVAIFW 647 >SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosaccharomyces pombe|chr 1|||Manual Length = 851 Score = 26.6 bits (56), Expect = 3.4 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = -2 Query: 123 TYYRTLCWRWPEGRL 79 +Y+ LCW WP+ R+ Sbjct: 356 SYFTVLCWIWPKNRV 370 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 25.8 bits (54), Expect = 6.0 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -1 Query: 232 RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 143 RRR+SK+ S L+ + +EE H L + I +P Sbjct: 946 RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976 >SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 179 Score = 25.4 bits (53), Expect = 7.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 351 TVTQGTCGFCTLEGNCLFQRLLRLTPSQY 437 T T C CTL G C+ RL R P ++ Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRF 131 >SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 25.4 bits (53), Expect = 7.9 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 99 ANTASDNTYSATSWPGTAMAVSR*QCSSCAK 191 A+ + N+ S+ ++ A A+SR +CS C K Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKK 347 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,891,194 Number of Sequences: 5004 Number of extensions: 60035 Number of successful extensions: 185 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 185 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 325165428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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