Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00591
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_36576| Best HMM Match : FerB (HMM E-Value=9)                        32   0.52 
SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)         28   6.4  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    28   6.4  
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     28   6.4  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  28   6.4  
SB_32| Best HMM Match : Amelogenin (HMM E-Value=4.2)                   28   8.4  

>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
 Frame = -3

Query: 260 EHLRFGSSC-TSSIFEG---RIG-WSA-----VLGARGTLSP*YSHSGSWPACRAVRIIG 111
           +H+ FG SC    I  G    +G W +     ++   G +S    H GSW +CR + I+ 
Sbjct: 77  DHVEFGGSCRVLGIMSGCGNHVGSWESCRVVGIMSGCGIMSSPGDHVGSWGSCRVLGIMS 136

Query: 110 RCVGGGLKVG 81
            C GGGL++G
Sbjct: 137 GC-GGGLRIG 145


>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
          Length = 223

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -2

Query: 240 ELHVVDFRRKNRMVCSTWRTRNIVTLIQP*RFLASLSRCTYYRTLCWRWPEGRLDEPLAR 61
           ELH+  FRR+NRM       R+I++      F      CT Y+ +CW++ E R+   L  
Sbjct: 64  ELHM--FRRENRMAGKQLPARDILS------FENKRRNCTVYKCVCWQYSE-RMHSSLIE 114

Query: 60  SLSKEQHQ 37
            +S    Q
Sbjct: 115 LVSSYLRQ 122


>SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 399 LFQRLLRLTPSQYILIWETVTDDMRRMIKKNCGNIMRLSDSE-GYFPRIGKVPETKDFGV 575
           +F   L +     +++   +    R ++ K+  N++ +   + G+ P +G+ PE   F V
Sbjct: 172 MFLYCLSIPRDLVVMVTVYILQTWRWVVVKHPSNVIEIKMKKAGFRPEVGQAPEEDTFSV 231

Query: 576 H 578
           H
Sbjct: 232 H 232


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 119  YVQRDKLARNRYGCIKVTMFLVRQVLQTIRFFLRKSTT 232
            YV+   L  NR  CI+V  + +  + Q +RFFL   TT
Sbjct: 2408 YVRTSWLPCNR--CIQVCTYALASLQQAVRFFLAADTT 2443


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 291 ASLFSGLVTLRTSSVWIELHVVDFRRKNRMVCSTWRTRNIVT 166
           A L + LVT+RT + W    V + +RK R +   W +  + T
Sbjct: 191 APLKAKLVTIRTKAAWYTPEVSEEKRKRRRLERKWVSTGLST 232


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 251 EDVRSVTNPENNEASIEHSHHTVDTGL 331
           ++++++TNP NNE  IE     +D GL
Sbjct: 61  DEIQNLTNPFNNEWHIEKRQPLIDMGL 87


>SB_32| Best HMM Match : Amelogenin (HMM E-Value=4.2)
          Length = 537

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 448 HINIYWLGVKRRRRWNRQFPSRVQKPQVP 362
           H  + W  VK+RRR   +    +QKP+ P
Sbjct: 333 HSAVSWKDVKQRRRVRVEAKHEIQKPETP 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,726,851
Number of Sequences: 59808
Number of extensions: 450653
Number of successful extensions: 1264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)