Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00591
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    31   0.56 
At3g13850.1 68416.m01749 LOB domain family protein / lateral org...    28   6.9  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.9  
At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains P...    27   9.1  

>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 544 PILGKYPSESE-SLIILPQFFLIIRRMSSVTVSHINIYWLGVKRRRRWNR 398
           P  G    +SE S  +    +L    MSS  + H+NIY + + R  RWN+
Sbjct: 137 PNSGSNSLQSELSTYVTEVCYLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At3g13850.1 68416.m01749 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD22) identical to
           SP|Q9LRW1 Putative LOB domain protein 22 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 268

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +3

Query: 78  PADLQATANTASDNTYSATSWPGTAMAVSR*QCSSCAKYCRPSDSSFENRRRAARSKPKM 257
           P  L+ +++T+S N  S       A A  + Q   CA  C  +     +R R   +  K+
Sbjct: 16  PTPLKPSSSTSSSNNNSTNQ----ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKL 71

Query: 258 FAVSLIQKITR 290
           F VS I KI +
Sbjct: 72  FGVSNITKIIK 82


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 620  YHLNLSNYDSMNIGVHSEIFCFWNFPYSWKISLG 519
            +HL L++ +S NI   + I  F N P  W IS G
Sbjct: 2988 FHLKLNDTESANIAYSNAITLFKNLPKGW-ISWG 3020


>At2g22400.1 68415.m02656 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 808

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +3

Query: 303 IHIIQLILDLTSRSRATV----TQGTCGFCTLEGNCLFQRLLRLTPSQYILIWETVTDDM 470
           +H +Q+IL +   S   V       TC    +E   +   +LR       L+   V+D +
Sbjct: 315 LHSLQIILAMRGLSLLKVGGKMIYSTCSMNPVEDEAVVAEILRRCGDSVELL--DVSDKL 372

Query: 471 RRMIKKNCGNIMRLSDSEGYFPRIGKVPETKDFGV 575
             +I++      ++ D  G+F     VP+ +  GV
Sbjct: 373 PELIRRPGLKAWKVRDKGGWFTSYKDVPQNRRGGV 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,942
Number of Sequences: 28952
Number of extensions: 316477
Number of successful extensions: 881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)