BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00590X (395 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 121 4e-29 SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc... 119 1e-28 SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 29 0.20 SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 1.8 SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 25 4.3 SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 4.3 SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 5.6 SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 7.4 SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 24 7.4 SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 24 7.4 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 9.8 SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 24 9.8 >SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Schizosaccharomyces pombe|chr 1|||Manual Length = 117 Score = 121 bits (292), Expect = 4e-29 Identities = 55/83 (66%), Positives = 68/83 (81%) Frame = +3 Query: 18 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRK 197 AP +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRK Sbjct: 8 APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRK 67 Query: 198 SEIEYYALLAKTGVHHYSGTTLN 266 SE+EYYA+L++ VHHYSG ++ Sbjct: 68 SELEYYAMLSRCSVHHYSGNNID 90 Score = 45.6 bits (103), Expect = 3e-06 Identities = 19/29 (65%), Positives = 24/29 (82%) Frame = +2 Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDII 340 +NI+LGTACGK +RV LA+ D GDSDI+ Sbjct: 87 NNIDLGTACGKLFRVGVLAVIDAGDSDIL 115 >SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Schizosaccharomyces pombe|chr 1|||Manual Length = 109 Score = 119 bits (287), Expect = 1e-28 Identities = 53/79 (67%), Positives = 66/79 (83%) Frame = +3 Query: 30 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 209 V KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E Sbjct: 4 VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63 Query: 210 YYALLAKTGVHHYSGTTLN 266 YYA+L+K VHHY+GT ++ Sbjct: 64 YYAMLSKANVHHYAGTNID 82 Score = 48.0 bits (109), Expect = 5e-07 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = +2 Query: 257 NIELGTACGKYYRVCTLAITDPGDSDII 340 NI+LGTACGK +RV LAITD GDSDI+ Sbjct: 80 NIDLGTACGKLFRVGVLAITDAGDSDIL 107 >SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccharomyces pombe|chr 1|||Manual Length = 433 Score = 29.5 bits (63), Expect = 0.20 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +3 Query: 42 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 167 ++KK I+ ++L SGKYC G T+ L++G + ++ Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318 >SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 154 Score = 26.2 bits (55), Expect = 1.8 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = +3 Query: 18 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 191 APK + KK KT++ + + ++ G K+ +K +R+G+ LVI+A + P+ Sbjct: 33 APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82 >SPAC977.14c |||aldo/keto reductase, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 351 Score = 25.0 bits (52), Expect = 4.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +3 Query: 150 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVH 242 ++ +VI++K P+RK I+ + L+ GVH Sbjct: 87 RSSIVILSKCFFPVRKDLIKIFGDLSSRGVH 117 >SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 540 Score = 25.0 bits (52), Expect = 4.3 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 312 MASVHTL*YLPHAVPNSMLSRCS 244 +ASVH YLP + + LS C+ Sbjct: 362 LASVHPFSYLPDSTNSKQLSHCA 384 >SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 1052 Score = 24.6 bits (51), Expect = 5.6 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +2 Query: 233 RCSPLQRDNIELGTACGKYYRVCTLAITDP 322 +C +QRD+I +V TL TDP Sbjct: 136 KCLEIQRDSIVYAADSAPIIQVSTLETTDP 165 >SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 328 Score = 24.2 bits (50), Expect = 7.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 311 WRVCTLCSIYRMLFLIQCCPAVVVNTCLS 225 W VC L SIY L + PA+ ++ S Sbjct: 212 WVVCFLWSIYICLLCLDLAPALFYDSLAS 240 >SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizosaccharomyces pombe|chr 2|||Manual Length = 360 Score = 24.2 bits (50), Expect = 7.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 235 PVLARRA*YSISDFLSGGAFLAMITSFAL 149 P+L ++ ++SDF+S A L +T FA+ Sbjct: 18 PLLFQKRSSNVSDFISFNASLPNVTIFAM 46 >SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizosaccharomyces pombe|chr 1|||Manual Length = 606 Score = 24.2 bits (50), Expect = 7.4 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 7 LAFTLPKWLQQRNRKRPSSQLTPAL 81 L ++L +WL N K PS+Q + L Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTL 153 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 23.8 bits (49), Expect = 9.8 Identities = 11/32 (34%), Positives = 16/32 (50%) Frame = -1 Query: 101 SRFHHQSKAGVN*LDGLFLFLCCNHFGSVNAN 6 +R ++ GV + LF CC FG+V N Sbjct: 1143 NRINNSKPLGVFRIHDPSLFACCYQFGAVFVN 1174 >SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||Manual Length = 360 Score = 23.8 bits (49), Expect = 9.8 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 235 PVLARRA*YSISDFLSGGAFLAMITSFAL 149 P L ++ +ISDF+S A L +T FA+ Sbjct: 18 PFLFQKRSSNISDFISFNASLPNVTIFAM 46 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,561,339 Number of Sequences: 5004 Number of extensions: 27838 Number of successful extensions: 74 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 74 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 132093910 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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