Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00590X
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 116 7e-27
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 109 1e-24
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 104 3e-23
03_05_0830 + 28034179-28035492 29 1.4
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 4.1
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 5.5
07_03_1085 - 23851852-23853165 27 5.5
12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555 26 9.6
10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960 26 9.6
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 26 9.6
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 26 9.6
03_01_0283 + 2193632-2195182 26 9.6
01_01_0319 - 2574583-2574675,2575853-2576055,2576140-2576364,257... 26 9.6
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 116 bits (279), Expect = 7e-27
Identities = 54/80 (67%), Positives = 65/80 (81%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 207 EYYALLAKTGVHHYSGTTLN 266
EYYA+LAK VHH+ G ++
Sbjct: 61 EYYAMLAKVTVHHFHGNNVD 80
Score = 57.6 bits (133), Expect = 3e-09
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITT 346
+N++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 77 NNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 109 bits (261), Expect = 1e-24
Identities = 49/79 (62%), Positives = 60/79 (75%)
Frame = +3
Query: 30 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 209
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 210 YYALLAKTGVHHYSGTTLN 266
YYA+L K VHH+ G ++
Sbjct: 103 YYAMLGKVSVHHFHGNNVD 121
Score = 62.1 bits (144), Expect = 2e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
+N++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 118 NNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 104 bits (249), Expect = 3e-23
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3
Query: 48 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLA 227
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 228 KTGVHHYSGTTLN 266
K V+H++G ++
Sbjct: 186 KVSVYHFNGNNVD 198
Score = 61.7 bits (143), Expect = 2e-10
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 358
+N++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 195 NNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 78 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 191
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 30 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 185
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>12_02_1130 + 26353501-26354218,26354878-26354967,26355080-26355555
Length = 427
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 302 CTLCSIYRMLFLIQCCPAVVVNTCL 228
C +C +F + CC V+ N CL
Sbjct: 292 CLVCKFEDPVFRLACCNKVLCNLCL 316
>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
Length = 721
Score = 26.2 bits (55), Expect = 9.6
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 235 PVLARRA*YSISDFLSGGAFLAMITSFALPCRRVFKVCLYPKQYFPDFITKARRELIDSM 56
PVL + Y++ L GAF A+ TSF + + + + ++F + LI S+
Sbjct: 36 PVLTQAVGYAV--VLGFGAFFALFTSFLVWLEKRYVGSQHTSEWFNTAGRSVKTGLIASV 93
Query: 55 VFFCF-FAATIL 23
+ + +AATIL
Sbjct: 94 IVSQWTWAATIL 105
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 15 YAPKMVA--AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQ 146
YAP+ V ++Q+K +E +N L+ + +G+Y K K +RQ
Sbjct: 375 YAPEDVRNDEERQEKFLEGLNDELSYPLMTGEYHDFQKLVDKAIRQ 420
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 93 KSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 188
KS Y GY + +T R+GK + I K+ PP
Sbjct: 18 KSAIYLWGYNHSGQTARKGKECHLRIPKSLPP 49
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 156 LLCLVEEFSKFACILSNIFPISSPKQGGS*LTRW 55
LLC VE FS C + + + + K S T W
Sbjct: 4 LLCFVEIFSILCCCIIYYYHLQTKKASASEPTEW 37
>01_01_0319 -
2574583-2574675,2575853-2576055,2576140-2576364,
2576590-2576603,2577146-2577210
Length = 199
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
++A Q+ + E+ N RL L +K+ + Q L+ + K K + K K+EI
Sbjct: 104 VLAQDSQRISQENENLRLQLALKTKELEHEENQKLRLQLELKNKDIESLKKQNDELKAEI 163
Query: 207 EYYALLAK 230
EYY K
Sbjct: 164 EYYKKTTK 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,931
Number of Sequences: 37544
Number of extensions: 188242
Number of successful extensions: 462
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -