Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00590X
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)       118   2e-27
SB_44729| Best HMM Match : SET (HMM E-Value=0)                         29   1.4  
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   2.4  
SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_26397| Best HMM Match : zf-C3HC4 (HMM E-Value=0.78)                 27   4.2  
SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)                  27   7.3  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)                      26   9.6  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score =  118 bits (283), Expect = 2e-27
 Identities = 56/69 (81%), Positives = 61/69 (88%)
 Frame = +3

Query: 57  IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG 236
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P LRKSEIEYYA+LAKTG
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQLRKSEIEYYAMLAKTG 60

Query: 237 VHHYSGTTL 263
           VHHY+G  +
Sbjct: 61  VHHYTGNNI 69



 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = +2

Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
           +NIELGTACGKY+RV  L+ITDPGDSDII ++P
Sbjct: 67  NNIELGTACGKYFRVSVLSITDPGDSDIIRSMP 99


>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 329 SHQGL*WRVCTLCSIYRMLFLIQCCPAVVVNTCLS*EGV 213
           +H  + W  C +CSI   L   + CPA     C+S EG+
Sbjct: 563 THVNVNW--CFVCSIGGTLICCESCPAAFHPECISYEGI 599


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 300 AHSPSQTLVTRTLSPLC 350
           AHSP+ TL+T TL+P C
Sbjct: 152 AHSPATTLITVTLTPNC 168


>SB_47701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 159 LVIIAKNAPPLRKSEIEYYALLAKTGVHH 245
           L++ A N PP + SE  Y+ALL     H+
Sbjct: 270 LILTAPNVPPQKGSENLYFALLTYRNPHY 298


>SB_26397| Best HMM Match : zf-C3HC4 (HMM E-Value=0.78)
          Length = 110

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 302 CTLCSIYRMLFLIQCCPAVVVNTCLS 225
           C +C    ++ +IQCC   + N CL+
Sbjct: 3   CIICKEEEIMDVIQCCKQTMQNRCLN 28


>SB_56434| Best HMM Match : DUF1225 (HMM E-Value=0.22)
          Length = 387

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 120 KQTLKTLRQGKAKLVIIAKNAPPLRK-SEIEYYALLAKTGVHHYSGTTLN*EQHAVNTT 293
           ++ LK      + ++I  K  PP  +  E+++Y ++    V  YSG  +N  +   NTT
Sbjct: 196 RKVLKAKENSNSSVIIRFKTTPPPNQVEELKFYRVVLME-VDGYSGVEMNTLRKLSNTT 253


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 305 VCTLCSI-YRMLFLIQCCPAVVVNTCLS 225
           VC L S+ Y +   + CC +V V+ CLS
Sbjct: 332 VCLLLSVRYCLSVTVHCCLSVTVHYCLS 359


>SB_59715| Best HMM Match : Fz (HMM E-Value=0.026)
          Length = 145

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 14  LRSQNGCSKETEKDHRVN*LPPCF-GDEIG 100
           L + + C  + +K +    +PPCF G+EIG
Sbjct: 51  LANYSSCQSDLKKIYCAELMPPCFPGEEIG 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,718
Number of Sequences: 59808
Number of extensions: 223812
Number of successful extensions: 578
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)