Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00590X
(395 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi... 119 8e-28
At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi... 117 2e-27
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi... 117 3e-27
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 28 2.0
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 2.6
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 27 3.4
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi... 26 7.9
>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
to GI:6984132 from [Euphorbia esula]
Length = 112
Score = 119 bits (286), Expect = 8e-28
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
MVAAKK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 207 EYYALLAKTGVHHYS 251
EYYA+LAK GVHHY+
Sbjct: 61 EYYAMLAKVGVHHYN 75
Score = 58.8 bits (136), Expect = 1e-09
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 251 RDNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
R+N++LGTACGKY+RV L+I DPGDSDII +LP
Sbjct: 76 RNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109
>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
to ribosomal protein L30 GI:388034 from [Homo sapiens]
Length = 112
Score = 117 bits (282), Expect = 2e-27
Identities = 54/80 (67%), Positives = 64/80 (80%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
MV KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60
Query: 207 EYYALLAKTGVHHYSGTTLN 266
EYYA+LAK GVHHY+G ++
Sbjct: 61 EYYAMLAKVGVHHYNGNNVD 80
Score = 56.0 bits (129), Expect = 9e-09
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
+N++LGTACGKY+RV L+I DPGDSDII ++P
Sbjct: 77 NNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109
>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
luteus]
Length = 112
Score = 117 bits (281), Expect = 3e-27
Identities = 54/80 (67%), Positives = 64/80 (80%)
Frame = +3
Query: 27 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 206
MVA KK KK+ E INSRLALVMKSGKY LGYK LK+LR K KL++I+ N PPLR+SEI
Sbjct: 1 MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60
Query: 207 EYYALLAKTGVHHYSGTTLN 266
EYYA+LAK GVH Y+G ++
Sbjct: 61 EYYAMLAKVGVHRYNGNNVD 80
Score = 58.4 bits (135), Expect = 2e-09
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2
Query: 254 DNIELGTACGKYYRVCTLAITDPGDSDIITTLP 352
+N++LGTACGKY+RV L+I DPGDSDII TLP
Sbjct: 77 NNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 57 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 188
I + +++ KS Y GY Q+ +T R + KL+ I K PP
Sbjct: 7 IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G + TLK L G + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 96 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 179
+GKY G + TLK L G + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324
>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 689
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = +2
Query: 86 GDEIGKILLRIQ----ANFENSSTRQSKAGY 166
G E+GKILLRI AN+ S +AGY
Sbjct: 501 GKEVGKILLRIDAKNPANYVMMSNLYGQAGY 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,295,313
Number of Sequences: 28952
Number of extensions: 150420
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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