Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00589X
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    64   2e-11
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   2.9  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   2.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   3.8  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   5.1  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   6.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.9  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
 Frame = +3

Query: 6   RKVIVKKLALCVVGRXXXXXXXXXXXXXX--KKQVFVIKEGVQYRIRIDFIVQREIVHGL 179
           R V++ KL+L V GR                +K+ F IKEG +++I + F VQ E++ GL
Sbjct: 69  RTVVILKLSLLVDGRDPVDVNMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGL 128

Query: 180 KYVQKTYRLGVPVDKMTHMVGSY-PPKLRFSLTQRP 284
           +YVQ   R G  VDK + M+GSY P +  +  T  P
Sbjct: 129 RYVQTVRRRGFVVDKTSTMIGSYGPSETPYDFTSEP 164



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = +2

Query: 251 PQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDWK 409
           P      +T+ P++AP+G++ARG Y  N  F DDDK VH ++ W+F++ K WK
Sbjct: 153 PSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFVWAFDVAKSWK 205


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 464 LRFRCSRLKQIKILFILFVSPFNRSRLHTYLV 559
           +RFRC R ++++  F L  +P +  R  T+ +
Sbjct: 313 IRFRCFRCRRVEYFFYLDSNPLSIQRTITHFI 344


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 265 SVLHNAPRGCTFRDNGAR 318
           S+ HN   G TF+D+GAR
Sbjct: 183 SIWHNVTLGSTFKDSGAR 200


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 316  RVVQRQQPLHRRRQERPPPVGVE 384
            R+V R QPLH R+  R  P  ++
Sbjct: 1068 RIVSRLQPLHSRQYTRESPFSIK 1090


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 108 VIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVG 242
           ++  G+   ++I  I   ++VHG+KY      +G+  D    +VG
Sbjct: 265 LLSGGLDGHVKIYNISDWKVVHGMKYSGPILSMGLSPDSCNLVVG 309


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 173 VHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQFDIIAPN 42
           +H L  ND++D +  L T L   ++L  +    +    ++  PN
Sbjct: 46  IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEETVYHLELFKPN 89


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 ILFILFVSPFNRSRLHTYL 556
           +LFIL  SPFNR +  T L
Sbjct: 630 LLFILSFSPFNRKKSKTIL 648


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 101 GIRDKGGCTIPNKDRFY 151
           GIRDKGG  I NK+  Y
Sbjct: 85  GIRDKGGVEISNKNDPY 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,392
Number of Sequences: 5004
Number of extensions: 49811
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)