Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00589X
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 66 2e-11
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 63 2e-10
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 50 2e-06
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682 31 0.56
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 31 0.56
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 29 2.3
01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,925... 29 3.0
11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453 28 5.2
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 5.2
03_02_0930 - 12480983-12481888 28 5.2
07_03_0382 + 17470508-17470807,17471449-17474517 27 9.2
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 27 9.2
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 406
SPQ E +Y TP E PSG+ ARGSYS + F DDD+ +L+ ++F+I++DW
Sbjct: 214 SPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDW 266
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 18 VKKLALCVV--GRXXXXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQ 191
V+ +LC++ GR K+ F +KEG YR++ F V IV GL+Y
Sbjct: 135 VRITSLCILSPGRPDVLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTN 194
Query: 192 KTYRLGVPVDKMTHMVGSYPPKL 260
++ G+ VDK M+G++ P+L
Sbjct: 195 TVWKAGIRVDKTKEMLGTFSPQL 217
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/53 (47%), Positives = 37/53 (69%)
Frame = +2
Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 406
SPQ E +Y TP E PSG+ ARGSYS + F DDD+ +L+ ++F+I+++W
Sbjct: 198 SPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCYLEINYTFDIRREW 250
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 105 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPK 257
F +KEG Y+++ F V IV GL+Y ++ G+ VD M+G++ P+
Sbjct: 150 FTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEMLGTFSPQ 200
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 93 KKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKL 260
K F +K+G Y R FIV IV GLKY ++ GV V+ M+G++ P+L
Sbjct: 109 KGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVMLGTFSPQL 164
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 14/67 (20%)
Frame = +2
Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYS--------------VNSLFTDDDKNVHLQWEWS 385
SPQ E +Y E P+G+ ARGSYS V F DDD +L+ +
Sbjct: 161 SPQLEPYTYEGEEETTPAGMFARGSYSAKLKVFKLIKFSSDVLIEFVDDDGKCYLEMSYY 220
Query: 386 FEIKKDW 406
FEI+K+W
Sbjct: 221 FEIRKEW 227
>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
Length = 511
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 239 WLLSPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDD 355
W +S +T++++ T PED M+R + N +DD
Sbjct: 218 WYVSRKTQLETNDTAPEDVEQNAMSRKTQETNGTAPEDD 256
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 31.5 bits (68), Expect = 0.56
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 104 IRDKGGCTIPNKD--RFYRSARDRARSEVRAEDLQTGRSS*QDDAYGWLLSPQTEIQSYT 277
I D+G C P + R + RD A SEV+ ED + + + +++ S E +
Sbjct: 108 IDDRGACFFPAPEGGRKRKRERDEAGSEVKGEDRRRRQPAAEEEDGDEASSGVEERSGES 167
Query: 278 TPPEDAPSGIMARGS 322
P D P ARG+
Sbjct: 168 RPEADEPDRKKARGT 182
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 340 LHRRRQERPPPVGVELRNQEGLERLSLALHSKIDWVG 450
L + RQ+ P GV L EGL+ +L L +ID +G
Sbjct: 250 LTQSRQQHPAAEGVSLGTTEGLQAKTLRLLLEIDQIG 286
>01_01_1162 -
9253034-9254229,9254387-9254456,9254473-9254567,
9255344-9255487,9255514-9255622
Length = 537
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 307 NGARVVQRQQPLHRRRQERPP---PVGVELRNQEGLERLSLALHSKIDWVGRGYLVAIPV 477
NG R + R L + + + P GVEL+ E LER+ L L D G Y+ + +
Sbjct: 11 NGRRAIPRWAGLQQPQASQWPIGHGGGVELKPPEHLERVELELEPSTDLSGLAYVEGVRI 70
>11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453
Length = 233
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 248 SPQTEIQSYTTPPEDAPSGI--MARGSYSVNSLFTDDDKNV 364
SP I S T PP+ APS +A S +V + F D +V
Sbjct: 168 SPAAGISSATAPPQFAPSSFSRIAASSQAVTTAFASDGGSV 208
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -1
Query: 179 QTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 72
++V +++L+ ++D Y VLY + E+L+ + Q+P+
Sbjct: 286 ESVLNVSLSGQVDDYCVLYCERFMEFLIDMLSQLPT 321
>03_02_0930 - 12480983-12481888
Length = 301
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 122 CTIPNKDRFYRSARDRARSEVRAEDL 199
C PN++ +Y ++ DRAR E R + L
Sbjct: 66 CYCPNRESYYLNSADRARQEDRQDML 91
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 367 PPVGVELRNQEGLERLSLALHSKIDWVGRGYLV 465
P VE+ +Q G+ R+ + S + WV R YLV
Sbjct: 1043 PDHSVEISSQIGVSRVPMNRISTLRWVVRSYLV 1075
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 301 RDNGARVVQRQQPLHRRRQERPPPVGVEL-RNQEGLERLSLA 423
R++ +++ QQ H+RR+ R PPV +L +E E +++A
Sbjct: 57 RESADLLMRMQQNKHQRRRYRIPPVNNKLGEKEEVTEEIAMA 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,100
Number of Sequences: 37544
Number of extensions: 332183
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -