Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00589X
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               79   3e-15
SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)                    29   2.3  
SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)                   29   3.1  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   29   4.1  
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)         29   4.1  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +2

Query: 251 PQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDWK 409
           P+ E   Y TP ++AP G+MARG Y + S F DDDKN HL+WEW+ EIKKDW+
Sbjct: 287 PKFEPHEYLTPIDEAPKGMMARGKYIIRSKFIDDDKNSHLEWEWAIEIKKDWQ 339



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 93  KKQVFVIKEGVQYRIRIDF-IVQREIVHGLKYVQKTYRLGVPVDK 224
           K     IKEG  Y+I+I F +   +I+ GL+     YR G+ V K
Sbjct: 139 KDSPITIKEGTYYKIKIIFKVYNDQIISGLRLHNLFYRKGIRVGK 183


>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
          Length = 354

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 561 TTRYVCN--LLRLNGETNKMKSILICFKREHRN 469
           T R+ C   L+R +  T K   I IC KR HRN
Sbjct: 89  TKRWQCRNVLVRWSRHTGKASGISICAKRHHRN 121


>SB_5326| Best HMM Match : HEAT (HMM E-Value=3.1e-05)
          Length = 538

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 167 DLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQFDIIAPNHTQC*LL 21
           D  L+D    Y +++T LY EYL+ EV       Q D+ + +   C +L
Sbjct: 390 DYVLSDPRTQYELIHTWLYQEYLMQEVKVEEVGDQPDLYSYDQVLCTIL 438


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 472 ESQLNSHVQPSRSSNVKPSLVFPVLLD 392
           E  L S+V+P  +SNV+P LV P LL+
Sbjct: 507 EPVLASNVEPVLASNVEPVLVSPALLN 533


>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
          Length = 373

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 278 TPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 397
           +PP  +PSG  A+    + + + ++D+   L+ EW F  K
Sbjct: 324 SPPRVSPSGTSAKFEKFILNQYREEDRKELLKEEWKFASK 363


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 301 RDNGARVVQRQQPLHRRRQERPPPVGVELRNQEGLERLSL 420
           ++ GA  + R+Q L   R   PPP+G    + +  ++LS+
Sbjct: 589 QEEGADTLSREQQLKPTRSAPPPPMGTRSSSPKPKDKLSV 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627,178
Number of Sequences: 59808
Number of extensions: 379777
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)