Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00589X
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    69   2e-12
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    69   2e-12

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +2

Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKD 403
           +P+ EIQ Y +P E+APSG+M RG Y V S  TDDD NV+L W+W+  I K+
Sbjct: 140 APKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITKE 191



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 3   PRKVIVKKLALCVVGRXXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGL 179
           P +VIV+ + L + G+                 + V IKEG  YR+   F VQREI  GL
Sbjct: 57  PLRVIVRSVELLINGKTAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGL 116

Query: 180 KYVQKTYRLGVPVDKMTHMVGSYPPKLRFSLTQRP 284
            Y  K  R G+ V+   +M+GSY PKL     + P
Sbjct: 117 HYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSP 151


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +2

Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKD 403
           +P+ EIQ Y +P E+APSG+M RG Y V S  TDDD NV+L W+W+  I K+
Sbjct: 140 APKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITKE 191



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +3

Query: 3   PRKVIVKKLALCVVGRXXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGL 179
           P +VIV+ + L + G+                 + V IKEG  YR+   F VQREI  GL
Sbjct: 57  PLRVIVRSVELLINGKTAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGL 116

Query: 180 KYVQKTYRLGVPVDKMTHMVGSYPPKLRFSLTQRP 284
            Y  K  R G+ V+   +M+GSY PKL     + P
Sbjct: 117 HYKHKVKRSGITVENEKYMMGSYAPKLEIQEYKSP 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,727,962
Number of Sequences: 27780
Number of extensions: 283380
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)