Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00589X
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    60   9e-10
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    59   3e-09
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    58   4e-09
At3g22380.1 68416.m02825 expressed protein                             30   1.1  
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    29   2.5  
At2g34357.1 68415.m04206 expressed protein                             28   5.8  
At1g07850.1 68414.m00852 fringe-related protein + weak similarit...    27   7.7  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = +2

Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 406
           SPQ E  ++  P E  PSG+ ARGSYS  + F DDD   +L+  +SF+I+K+W
Sbjct: 185 SPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 237



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +3

Query: 105 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPKL 260
           F +KEG +Y ++  F V   IV GL+Y    ++ GV VD+   M+G++ P+L
Sbjct: 137 FTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEMLGTFSPQL 188


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +2

Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 406
           SPQ E  ++    E APSG++ RGSYSV S F DDD   +L+  ++F+I+K+W
Sbjct: 170 SPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKNW 222



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 105 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPK 257
           F +KEG +Y +   F V   IV GL+Y    ++ G+ V     M+G++ P+
Sbjct: 122 FTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQ 172


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = +2

Query: 248 SPQTEIQSYTTPPEDAPSGIMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDWK 409
           SPQ E   +  P E  PSG+ ARGSYS  + F DDD   +L+  ++F+I+K W+
Sbjct: 170 SPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKSWQ 223



 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +3

Query: 105 FVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMVGSYPPK 257
           F IKEG +Y +  +F V   IV GL+Y    ++ GV VD    M+G++ P+
Sbjct: 122 FTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSPQ 172


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 80  LDRPQKAGIRDKGGCTIPNKDRFYRSARDRARSEVRAEDLQTGRS 214
           ++ P+ A +RD+GG    ++DR     R+R R   R  D    RS
Sbjct: 39  VELPEAARLRDRGGSNKKDRDRERDRDRERERERDRERDRLNSRS 83


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 248 IGANHMRHLVNWNAQSVGLLHVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSE 69
           +G  + +   N N  +VG L+ +   H  A+  K++ +  L  LL HE L   +  V SE
Sbjct: 199 VGEVYRKFSTNENTITVGGLYAID--HSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSE 256

Query: 68  I 66
           I
Sbjct: 257 I 257


>At2g34357.1 68415.m04206 expressed protein
          Length = 1280

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 194 LLHVLQTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPSEIQFDIIAPNH 39
           L+H+L TV  + +N+  D Y++L   + H     +V ++ S    D++  +H
Sbjct: 142 LVHLLTTVESIMVNEGSDSYNILLNFVTHSD--GKVRKLASSCLRDVLQKSH 191


>At1g07850.1 68414.m00852 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 560

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 69  DPVRHHRAQPHTMLAS*LSLC 7
           DP+R H+  PH + AS L+ C
Sbjct: 521 DPLRWHKVGPHLLFASLLTTC 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,002
Number of Sequences: 28952
Number of extensions: 263011
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)