Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00588X
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    29   0.51 
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    27   2.7  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.6  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    26   4.8  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.8  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    26   4.8  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    25   8.3  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   8.3  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 378 VKTVRSLVDNQGSDVCRDVVSQLVSHGIKNAMSFAYKLWH 497
           +K  R  ++++ SD+C DV+S L  H I  A +   K+++
Sbjct: 83  IKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
 Frame = +3

Query: 306 VFADASSINNHLYNLVTGGDYINAVKTVRS-LVDNQG----SDVCRDVVSQLVSHGIKNA 470
           V   + S+ N  Y+++     +N  K +RS ++D       +  C D++S  +S    +A
Sbjct: 63  VTGSSESMENWFYSILG----LNDEKIIRSAMIDLDRLYTTNPACPDLISAFLSFRGFHA 118

Query: 471 MSF---AYKLWHEGHKTSSKITSRANSNSYSTKRELNSSANI 587
           +     A+ LW EG KTS+ +     + +Y    +++ +A+I
Sbjct: 119 LQLYRIAHGLWSEGDKTSAVLVQNWTAVAYGV--DIHPAASI 158


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 390 RSLVDNQGSDVCRDVVSQLVSHGIKNAMSFA 482
           + L  N  SDV + +++++  HG K A  ++
Sbjct: 320 KELSSNLVSDVAKKIINEVTGHGYKEAREYS 350


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 202 IQNLERELGKKGLYYGAG 255
           I   E+++G+KGL +GAG
Sbjct: 454 IATTEKDIGRKGLQFGAG 471


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 438  SQLVSHGIKNAMSFAYKLWHEGHKTSSKI 524
            ++LVSH +  A    ++ WHEG + +S++
Sbjct: 1811 ARLVSHELIRAAILWHEQWHEGLEEASRL 1839


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 VNASEGSSLPTDI-LTILTTFKISSVSLVKRAYTMEPVRTAR 268
           +  S  S LP D  L+ +TTF + SV+ +   Y  +P+ T +
Sbjct: 187 IKQSLQSRLPPDEKLSTVTTFLVGSVAGIITVYCTQPIDTVK 228


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 467 RHVVRVQAVARGP--QDIVEDYFPSEFQLILDQKRIKLIGK 583
           +H +RV AVA GP    +V   FP E   + DQ  +  +G+
Sbjct: 212 QHGIRVNAVAPGPIYTPLVSSTFPKEKIELSDQVPLGRMGQ 252


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   ESKYPTGSPSCLWTTATLPVTSGTTAS 83
           E+KYPT SP+   +  + P   GTTA+
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTAN 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,838
Number of Sequences: 5004
Number of extensions: 38584
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)