Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00588X
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 1.6
04_04_1345 + 32792879-32794207 30 1.6
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 29 2.1
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.7
12_02_0880 + 23965602-23965614,23966150-23966370,23966467-239665... 28 4.9
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 4.9
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 28 4.9
07_03_0154 + 14509979-14512033 28 6.5
05_04_0364 + 20658219-20658416,20658475-20658543 28 6.5
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 27 8.5
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 27 8.5
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 27 8.5
07_01_0117 + 894314-896677 27 8.5
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 27 8.5
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 8.5
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 62 NWKCRCRPQTRRGSCWVF 9
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>04_04_1345 + 32792879-32794207
Length = 442
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 361 PPVTKLYK*LLIELASAKTLFVLNSVWV-LKSAGSSYRLHSISPFYQAHAR 212
PPVTK Y LL A + L +W + S G + LHS S + A A+
Sbjct: 174 PPVTKTYNLLLRGWAKTRAWARLRQLWFDMDSRGVAKDLHSYSIYMDALAK 224
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 57 PVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKAR 167
P +GT+A LLPS G + S ++Q + GS+ A+
Sbjct: 303 PPAAGTSAGPLLPSGGGATGSASVQATGGSAVSVDAK 339
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 7 ANTQQDPRRVCGRQRHFQLHQGRQRQNCYHQHGANH 114
+N ++ PRR GR R GR R YHQH NH
Sbjct: 359 SNDKEGPRRGRGRGRG-----GRGRGRGYHQHNNNH 389
>12_02_0880 +
23965602-23965614,23966150-23966370,23966467-23966503,
23966917-23967100,23967263-23967411,23967515-23967745,
23967850-23968039,23968124-23968433,23968658-23969050
Length = 575
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 324 SINNHLYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSQLVSHG 458
++ +H+YNL G D A + + +Q SD RD+ + HG
Sbjct: 268 TMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDLQMTIQRHG 312
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 15 PTGSPSCLWTTATLPVT-SGTTASKLLPSARGQSLSGALQTSPGSSTRPKA 164
PTG P TT +P + SG + + S +G +S + Q PG + P+A
Sbjct: 58 PTGPPPV--TTTPMPTSASGAFSQPSMQSNQGGQVSQSQQERPGQTVYPQA 106
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 178 GYSDNSDDIQNLERELGKKGLYYGAGTNCPQT*GPRRNSARRGS 309
G +D D++ R G++GL + G P+ G +SARR S
Sbjct: 834 GANDGGGDVRADMRREGRRGLQHMEGEGVPREPGGGADSARRRS 877
>07_03_0154 + 14509979-14512033
Length = 684
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 48 ATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKARR 170
ATL ++S A ++P+A ++ +GA+ PGS + K RR
Sbjct: 112 ATLYLSSAGAAGVIVPAAAPEASAGAV-AQPGSGSGAKKRR 151
>05_04_0364 + 20658219-20658416,20658475-20658543
Length = 88
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 42 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKARR 170
+T LPV +++ SAR L L PG S RP + R
Sbjct: 12 STCRLPVMKSRHPTRIAQSARPTQLPETLTLQPGRSGRPVSYR 54
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 103 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYL 8
+ DGNSF +PD TG + +H D G L
Sbjct: 439 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGAL 472
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -1
Query: 529 EVIFDDVLWPSCHSLYANDMAFLMPCETSCETTSRQTSEPWLST 398
+V+ + + PSC +++ D+ + C+T +PW S+
Sbjct: 134 QVLRESLNGPSCEAVHLTDIQSSIECDTFIPPIDLSVFQPWYSS 177
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 103 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYL 8
+ DGNSF +PD TG + +H D G L
Sbjct: 442 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGAL 475
>07_01_0117 + 894314-896677
Length = 787
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -3
Query: 77 CRP*CNWKCRCRP--QTRRGSCWV 12
C P CNW + +P Q G CWV
Sbjct: 499 CSPLCNWVFKLQPSWQLLPGPCWV 522
>06_03_1069 - 27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 527 SNLRRCLVALVPQLVRERHGVLDAMRDELRDDVATDVGALVVDETAH 387
SN+ L +P + H + RD++RD + +D G+ + TAH
Sbjct: 899 SNVLSALSMPIPPFLATFHTCISTPRDQVRDLIKSDGGSQLDLPTAH 945
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 467 VLDAMRDELRDDVATDVGALVVDETAHS 384
V D M + DDV D+ AL V T HS
Sbjct: 71 VPDGMPESGNDDVTQDIAALCVSTTRHS 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,699,609
Number of Sequences: 37544
Number of extensions: 275309
Number of successful extensions: 1125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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