Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00588X
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0) 29 3.7
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_39011| Best HMM Match : Ponericin (HMM E-Value=1.5) 28 6.5
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 8.6
SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16) 27 8.6
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18) 27 8.6
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092) 27 8.6
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 42 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKAR 167
+T + P+T GT ++ PSA G ++ + ++P + + P R
Sbjct: 157 STPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 198
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 42 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKAR 167
+T + P+T GT ++ PSA G ++ + ++P + + P R
Sbjct: 707 STPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 748
>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/32 (46%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +3
Query: 6 SKYPTGSPSCLWTT-ATLPVTSGTTASKLLPS 98
+K TG P+C WT+ +TL +T+GT+A+ ++PS
Sbjct: 482 AKLGTG-PTCSWTSKSTLVITTGTSAT-IMPS 511
>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
Length = 900
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 92 TISTGPITKRCAADVARIVNASEGSSLPTD-----ILTILTTFKISSVSLVKRAYTMEPV 256
T +T + ++ A A +NA+ L T I T T F+ S+ SLV P
Sbjct: 168 TTNTKQMKQQIAPTAAMSLNATHSIGLVTPDKDAVITTQATAFEKSTSSLVAAKSGKHPP 227
Query: 257 RTARRLEDPD 286
TA LE+PD
Sbjct: 228 PTAAPLEEPD 237
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +3
Query: 339 LYNLVTGGDYINAVKTVRSLVDNQGSDVCRDVVSQLVSHGIKNAMSFAYKLWHEGHKTSS 518
LY+ T G+ ++++ SLV N ++ D G + S+ + L H G S
Sbjct: 1922 LYHAFTPGEGQSSLRAKESLVVNSETNSISDKEEFTRVQGKTESDSYMFGLSHSGSDGHS 1981
Query: 519 KITSRANSNSYSTKRELNSSAN 584
A+S K + NSS++
Sbjct: 1982 VSRESASSAFSFIKEDYNSSSS 2003
>SB_39011| Best HMM Match : Ponericin (HMM E-Value=1.5)
Length = 124
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 435 VSQLVSHGIKNAMSFAYKLWHEGHKTS 515
V QL+ HG+KNA + Y++ +G K +
Sbjct: 88 VKQLLVHGVKNAANAGYEVLKKGGKNA 114
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 405 NQGSDVCRDVVSQLVSHGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYSTKRELNSS 578
+Q C+++++ HG+ +Y+ W H S A S + + KR L+S+
Sbjct: 1113 DQNRGKCKEIITSFAKHGVSKKQVCSYR-WPRKHCPQSCDLCGAASPAITLKRCLSST 1169
>SB_17883| Best HMM Match : ShTK (HMM E-Value=0.16)
Length = 209
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 405 NQGSDVCRDVVSQLVSHGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYSTKRELNSS 578
+Q C+++++ HG+ +Y+ W H S A S + + KR L+S+
Sbjct: 45 DQNRGKCKEIITSFAKHGVSKKQVCSYR-WPRKHCPQSCDLCGAASPAITLKRCLSST 101
>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 414 SDVCRDVVSQLVSHGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYSTKRE 566
+++ + V S+ + +K SF ++ + +KT K+ SRA + +Y TK++
Sbjct: 405 TNLIQAVSSEQNLNQLKRQQSFD-RIPRKAYKTGQKLPSRAGTGTYCTKKD 454
>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
Length = 427
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 286 VWVLKSAGSSYRLHSISPFYQAHARDF 206
+W+ + +G+ Y LH + + H+RDF
Sbjct: 82 LWLNEHSGAVYMLHETTQCFLTHSRDF 108
>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
Length = 1270
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 381 KTVRSLVDNQGSDVCRDVVSQLVSHGIKNAMSFAYKLWHEGHKTSSKITSRANSNSYSTK 560
K ++ LV GS+ R Q V +K+ +S + +W S+ ++ S S
Sbjct: 740 KPIQHLVSQSGSESVRQSAYQSVGQSVKHLVSQSGTIWRSQSGKSAMSAGQSRSLRLSDM 799
Query: 561 RELN 572
LN
Sbjct: 800 LALN 803
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,675
Number of Sequences: 59808
Number of extensions: 308605
Number of successful extensions: 1253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -