Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00588X
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF043704-4|AAK21479.1|  109|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z48585-1|CAA88486.1|  154|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   4.4  
U23515-3|AAU87817.1|  345|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AL110471-3|CAB63308.1|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 455 WHQERHVVRVQAVARGPQDIVEDYFPSE 538
           +HQ+ H V V+ V    +++ EDY PSE
Sbjct: 785 FHQKSHNVEVKKVQEKVEEVDEDYVPSE 812


>AL034364-6|CAA22254.2|  818|Caenorhabditis elegans Hypothetical
           protein W06D4.6 protein.
          Length = 818

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 455 WHQERHVVRVQAVARGPQDIVEDYFPSE 538
           +HQ+ H V V+ V    +++ EDY PSE
Sbjct: 785 FHQKSHNVEVKKVQEKVEEVDEDYVPSE 812


>AF043704-4|AAK21479.1|  109|Caenorhabditis elegans Hypothetical
           protein W01B11.6a protein.
          Length = 109

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 YGYSDNSDDIQNLERELGKKGLYYGAGTNCP 267
           Y    + D +Q  E  +GKK +YY  G  CP
Sbjct: 4   YDCLTDEDFLQKSEHGIGKKAIYYFYGERCP 34


>Z48585-1|CAA88486.1|  154|Caenorhabditis elegans Hypothetical
           protein ZK673.1 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 42  TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSST 152
           TTA    T GTTA+    +  G ++SGA   + G++T
Sbjct: 27  TTAATTATGGTTATGGTTATGGTTVSGATTAASGATT 63


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 18   TGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRP 158
            + SP    ++ ++P ++G T+S    +  G S  GA QTS  SST P
Sbjct: 1505 SSSPQPTVSSTSVPSSTGATSSGSSTTV-GSSTVGATQTSVSSSTVP 1550


>U23515-3|AAU87817.1|  345|Caenorhabditis elegans Hypothetical
           protein R144.6 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 494 PQLVRERHGVLDAMRDELRDDVATDVGALVV 402
           PQ   ER  ++ A  D+L DDVA D   +VV
Sbjct: 145 PQTASERSPLMVAPDDDLTDDVAPDDSDIVV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,081
Number of Sequences: 27780
Number of extensions: 224626
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)