Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00585
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 66 2e-12
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 64 1e-11
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 43 3e-05
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 1.0
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 26 3.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 5.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.3
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 7.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 7.3
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 24 9.6
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 24 9.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 9.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 66.5 bits (155), Expect = 2e-12
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +2
Query: 119 RQVQDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQGAGGAP 259
+ V++TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ AGGAP
Sbjct: 570 KAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ-AGGAP 615
Score = 47.6 bits (108), Expect = 9e-07
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +3
Query: 12 IQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCKTPSSGWI 152
IQAKN LESY +S++++++D LK+K+ SDK+ I DK + W+
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAI-DKAVKETIEWL 579
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 64.1 bits (149), Expect = 1e-11
Identities = 29/47 (61%), Positives = 38/47 (80%)
Frame = +2
Query: 119 RQVQDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITKMYQGAGGAP 259
+ V++TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ AGGAP
Sbjct: 570 KAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ-AGGAP 615
Score = 49.6 bits (113), Expect = 2e-07
Identities = 21/50 (42%), Positives = 36/50 (72%)
Frame = +3
Query: 12 IQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCKTPSSGWIPTS 161
IQAKN LESY +S++++++D LK+K+ SDK+T+ DK + W+ ++
Sbjct: 534 IQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETV-DKAVKETIEWLDSN 582
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 42.7 bits (96), Expect = 3e-05
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 KETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILD 122
KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD
Sbjct: 561 KERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLD 601
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Frame = +2
Query: 125 VQDTIKWLDSN-QLADKEEYEHKQKELEGIYNPIITKMY-QGAGGAPE 262
V+D +WL+ + + A KEE+E ++++L+ + +PI K+Y +GAG A E
Sbjct: 603 VEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLYSEGAGDADE 650
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 6 ETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCKTPSSGWI 152
ET+ KNALE Y + ++ ++D + ++ ++ + + T + W+
Sbjct: 575 ETVDRKNALEEYIYDTRAKLDD--IYAPFTNEEESSKFKEMLTKAEDWL 621
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 107 ADHPRQVQDTIKWLDSNQLADKEEYEHKQKELEGIYNP 220
+D P + +K D + ++ ++E E + +GIY P
Sbjct: 134 SDGPASENNVVKEDDKSSISSEDEEEELRSAKDGIYRP 171
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 287 HPEPEVPPPGLEALAPPSRRSIKPTFHTTXKPTCNNHLVTS 409
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 3 KETIQAKNALESYCFSMKST 62
K+TI KNA++ Y S+K T
Sbjct: 260 KQTILTKNAIQDYLVSLKIT 279
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 33 ESYCFSMKSTMEDEKLKEKISDSDKQTILDKCKTPSSGWIPTSWPTR 173
E CF + LK ++S+ + + + + +S W+P PTR
Sbjct: 722 ELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSENSKWMP-EMPTR 767
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 289 VLRPGSPAYLRGSSGTLVHLRNY 221
+LRPG P Y++ G+L + + Y
Sbjct: 213 ILRPGVPEYVKYVQGSLDYRKEY 235
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 48 SMKSTMEDEKLKEKISD 98
S+K MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/75 (20%), Positives = 30/75 (40%)
Frame = +2
Query: 161 LADKEEYEHKQKELEGIYNPIITKMYQGAGGAPEVCRASRAEHPEPEVPPPGLEALAPPS 340
+ D EE E K + +EG N +++ + A ++ A + +PE + A +
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKPETQAQNMSASESQA 432
Query: 341 RRSIKPTFHTTXKPT 385
P +P+
Sbjct: 433 NSPAPPVEEGNTQPS 447
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 320 EALAPPSRRSIKPTFH 367
+ L P +RSIKP FH
Sbjct: 142 QTLIPSQQRSIKPPFH 157
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +2
Query: 290 PEPEVPPPGLEALAPP 337
P P PPPG+ PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,607
Number of Sequences: 5004
Number of extensions: 31123
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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