Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00584X
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 58 7e-09
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 40 0.002
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 38 0.005
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.011
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15) 37 0.014
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 37 0.014
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 36 0.033
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34) 34 0.075
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 33 0.13
SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 33 0.13
SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93) 33 0.23
SB_39326| Best HMM Match : TPR_2 (HMM E-Value=3.5e-05) 30 1.2
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 29 2.1
SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3) 29 2.1
SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06) 29 2.1
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 29 2.1
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0) 28 4.9
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043) 28 4.9
SB_16780| Best HMM Match : Ras (HMM E-Value=6.7e-05) 28 4.9
SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 28 6.5
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 28 6.5
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 28 6.5
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 28 6.5
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +1
Query: 112 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMI 255
LAE KK GN Y KNY A+A+Y +AI+ P A +YGNRSA YM+
Sbjct: 33 LAEAKKAEGNREYGLKNYVSAIALYSKAIEFAPHVATFYGNRSAAYMM 80
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 YKKALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQTVQRATELGGV-ECVSGELR 440
Y KALEDA ++ +D F KG+ RAAKC +A+G N + +++ EL + +++
Sbjct: 84 YDKALEDALLSIEIDNNFVKGHYRAAKCHLAMGSASNALREIRKVLELDPKNKDARADMK 143
Query: 441 ALETLKRLHEDAQRALDANDYRR 509
+ + ++ A A D DYR+
Sbjct: 144 SAKMVQDFESSALEAYDKKDYRK 166
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 509 VVFCMDRCLDYSPSCTKCQLTKAECLALL 595
VVFCM LD P+ T ++ KAE LAL+
Sbjct: 167 VVFCMRNILDVCPAATFFKVMKAEALALM 195
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +1
Query: 100 SPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYM 252
S E AE+ K N +K NY A+ Y +AI+L + AYYGNRS CY+
Sbjct: 182 SLEKEAEDLKLKANGYFKEGNYNSAITFYTQAIELKADVPAYYGNRSFCYL 232
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 264 YKKALEDAQKAVSLDPTFTKGYIRAAKCCIALG 362
Y AL DA KA+ LD + KGY R A +ALG
Sbjct: 237 YGLALADANKAIQLDRKYIKGYYRRATANMALG 269
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 121 EKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMIYACIRRLLK 282
E+K+ GN +K ++ A Y EAIK PE+A Y NR+A + A L+
Sbjct: 367 EEKEKGNEYFKKGDFPSAQKHYTEAIKRNPEDAKLYSNRAATFQKLAAFNLALE 420
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 115 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMIYACIRRLLKMHRK 294
A + KD GN + + A+ Y EAI L P N +Y NRSA + + L+ RK
Sbjct: 9 AAKLKDQGNAALSAGDTQKAIEFYTEAILLDPANHVFYSNRSAAFAKLSKYNEALEDARK 68
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 255 LCMYKKALEDAQKAVSLDPTFTKGYIR 335
L Y +ALEDA+K V + P + KGY R
Sbjct: 56 LSKYNEALEDARKCVEIKPDWGKGYSR 82
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 97 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKL-CPE---NAAYYGNRS 240
++P A K+ GNY YK KN+K A+ Y E IKL C + NA Y NR+
Sbjct: 78 ENPVENALSYKEEGNYEYKRKNFKKAIDAYTEGIKLRCQDGHVNAILYTNRA 129
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +1
Query: 100 SPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLC-PEN----AAYYGNRSACY 249
+P A+ K GN +K Y+ A+ Y EAI+LC PEN + +Y NR+A Y
Sbjct: 136 TPSEQAQVAKLKGNKYFKGCKYEQAIKCYTEAIELCPPENKQDLSTFYQNRAAAY 190
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 97 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMIYACIR 270
+S L E+ K +G+ K +++ A+ +Y EAIKL P N YGNRSA ACIR
Sbjct: 17 QSRPGLHEKAKWAGDACSK-GDFQKAVELYSEAIKLDPNNHVLYGNRSA-----ACIR 68
>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 97 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRS 240
K E++A + K+ GN +K + Y+ A+ +Y +A+ N A+Y NR+
Sbjct: 114 KQREAVALQLKEKGNLAFKQQKYEEAVKLYTQALNQDRTNTAFYTNRA 161
>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
Length = 458
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 136 GNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACY 249
GN + NY+ A+ ++ +AIKL + ++GNRS C+
Sbjct: 276 GNEMANLGNYQAAIELFTQAIKLDARDFRFFGNRSYCF 313
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 255 LCMYKKALEDAQKAVSLDPTFTKGYIRAAKCCIAL 359
L ++KAL+DA A+SL P + KG+ R + L
Sbjct: 316 LGQFEKALQDADVAISLAPDWPKGFFRRGRALAGL 350
>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 868
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 115 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYM 252
+E++K GN + YK A++ Y AI P N YGNR+ Y+
Sbjct: 500 SEDRKLQGNDHFNHGKYKAAISAYTLAISGAPYNHILYGNRAQSYL 545
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 112 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRS 240
LA +KD GN ++ +YK +L Y +I+L P AA Y NR+
Sbjct: 214 LANREKDKGNDAFRSGDYKESLVYYTRSIELKP-TAASYNNRA 255
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 94 PKSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGN--RSACYMIYACI 267
P+ +LA KD G LYK Y A+ Y +AI + ++ +++ + S Y +C+
Sbjct: 408 PRDLPNLAVRAKDEGMRLYKIGRYAEAVEKYSQAIDVLWKDKSHFKSALASLLYNRASCL 467
Query: 268 RRL 276
R+
Sbjct: 468 GRI 470
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 127 KDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYM 252
K GN + + + A+ MY+EA+ L P +A Y NR+A ++
Sbjct: 338 KTIGNEAFCKQQFLTAVNMYNEALNLAPNSAVLYANRAAAFI 379
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 273 ALEDAQKAVSLDPTFTKGYIRAAKCCIAL 359
AL D KA++LDP TK + R A+C L
Sbjct: 390 ALRDCHKALTLDPNHTKAHFRQARCLYEL 418
>SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34)
Length = 935
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 207 PRKCSILRQQI----CMLH-DLCMYKKALEDAQKAVSLDPTFTKGYIRAAKCCIALG 362
P CS +R + C+++ + Y +AL DA+K V+ P + K Y R + C ALG
Sbjct: 695 PESCSEMRGALLSNRCLIYLNTYQYDEALADAKKCVASRPGWFKAYYRLSCCLKALG 751
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 270 KALEDAQKAVSLDPTFTKGYIRAAKC 347
+A+ED +A++LD T+TK Y++ A C
Sbjct: 89 QAIEDCTQAMNLDHTYTKAYLKRANC 114
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 118 EEKKDSGNYLYKFKNYKGALAMYDEAIKLCPE----NAAYYGNRS 240
+ KK GN + +Y+ A +Y EA+++ P+ NA Y NR+
Sbjct: 34 QAKKQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRA 78
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 270 KALEDAQKAVSLDPTFTKGYIRAAKC 347
+A+ED +A++LD T+TK Y++ A C
Sbjct: 89 QAIEDCTQAMNLDHTYTKAYLKRANC 114
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 118 EEKKDSGNYLYKFKNYKGALAMYDEAIKLCPE----NAAYYGNRS 240
+ KK GN + +Y+ A +Y EA+++ P+ NA Y NR+
Sbjct: 34 QAKKQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRA 78
>SB_42049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 115 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNR 237
AEE K+ GN L K + ++ A+ Y AI+L N+ Y NR
Sbjct: 91 AEELKNEGNQLMKEEKFQEAINSYSRAIELDNTNSVYPCNR 131
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 33.5 bits (73), Expect = 0.13
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Frame = +1
Query: 100 SPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLC----------PENAAYYGNRSACY 249
+P+S A E K+ GN +K +Y+ AL+ Y A+KL E A Y NR+AC
Sbjct: 5 NPKS-AVEIKEEGNKYFKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQ 63
Query: 250 MIYACIRRLLKMHRKLYHWIQHSPK 324
+ +K K + + PK
Sbjct: 64 LKLEKYEAAIKDATKALDIVPNDPK 88
>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 927
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 267 KKALEDAQKAVSLDPTFTKGYIRAAKCCIALGDL 368
K AL + + AV L P F GYI A +A GDL
Sbjct: 132 KDALANYRHAVKLKPDFIDGYINLAAALVAAGDL 165
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 97 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSA 243
K LAE + GN + K ALA Y A+KL P+ Y N +A
Sbjct: 109 KQNPMLAEAYSNLGNVFKERGQLKDALANYRHAVKLKPDFIDGYINLAA 157
>SB_36933| Best HMM Match : TNFR_c6 (HMM E-Value=0.93)
Length = 524
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 228 RQQICMLHDLCMYKKALEDAQKAVSLDPTFTK 323
R Q C ++ C YKK L K LDP F K
Sbjct: 395 RHQFCPMNSWCKYKKGLPCKDKEYHLDPIFVK 426
>SB_39326| Best HMM Match : TPR_2 (HMM E-Value=3.5e-05)
Length = 187
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 291 KAVSLDPTFTKGYIRAAKCCIALGDLLNGEQTVQRATELG-GVECVSGELRALETLKRLH 467
+ + +DP K R K + G+L +++A +L + + ELR+L K +
Sbjct: 2 QVLQIDPDNVKALFRKGKVLASKGELSEALPLIKKANQLDPNNKTIRAELRSLRKRKSIQ 61
Query: 468 EDAQRAL 488
++ +R++
Sbjct: 62 DEKERSM 68
>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 503
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 160 NYKGALAMYDEAIKLCPENAAYYGNRSA-CYMI 255
NYK ALA Y++A+K P++ R+A CY +
Sbjct: 55 NYKQALACYNQALKHNPDDPTILWERAAVCYQM 87
>SB_29154| Best HMM Match : RNA_pol_Rpb2_7 (HMM E-Value=2.3)
Length = 416
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 228 RQQICMLHDLCMYKKALEDAQKAVSLDPTFTK 323
R Q C + C YK L K LDP F K
Sbjct: 227 RHQFCSANSWCKYKNGLPCEDKDYHLDPVFIK 258
>SB_28629| Best HMM Match : FCH (HMM E-Value=5.2e-06)
Length = 317
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +1
Query: 106 ESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMIYACIRRLLKM 285
E+ +++S ++ NYK + D+ KLC + R+ +YA ++LK
Sbjct: 38 ETKPTTQQESEASFWEVNNYKRTVRRVDDGAKLCDDFMKMVSERAEIEALYAAKLQVLKS 97
Query: 286 HRKLY 300
+ Y
Sbjct: 98 KKAYY 102
>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 592
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 97 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYM 252
+ P+S G+ L+K + Y+ AL Y A++L P + RS CY+
Sbjct: 10 EGPKSSFSTYLAEGDVLFKQEEYQKALDSYSLALELKPTDPFCLVARSKCYL 61
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 115 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYM 252
A + ++ GN K + ++ AL Y + I+L + + NR+ C++
Sbjct: 864 ANDFREKGNDAVKREEFQEALDWYTKGIELTKTDHRLFSNRALCHL 909
>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
Length = 437
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = +3
Query: 252 DLCMYKKALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQTVQRATELGGVECVSG 431
D+ KKA + ++ +P G+I AA+ G + T+ + TE+ C
Sbjct: 289 DIGDIKKARLLLKSVITTNPQHAPGWIAAARLEEVTGRMQAARNTIMKGTEV----CEKN 344
Query: 432 ELRALETLKRLHEDAQRALDANDYRR 509
E LE ++ DA +A+ A R+
Sbjct: 345 EDIWLEAVRLQPPDAMKAVVAQAVRQ 370
>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
Length = 758
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = +3
Query: 252 DLCMYKKALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQTVQRATELGGVECVSG 431
D+ KKA + ++ +P G+I AA+ G + T+ + TE+ C
Sbjct: 30 DIGDIKKARLLLKSVITTNPQHAPGWIAAARLEEVTGRMQAARNTIMKGTEV----CEKN 85
Query: 432 ELRALETLKRLHEDAQRALDANDYRR 509
E LE ++ DA +A+ A R+
Sbjct: 86 EDIWLEAVRLQPPDAMKAVVAQAVRQ 111
>SB_16780| Best HMM Match : Ras (HMM E-Value=6.7e-05)
Length = 138
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 223 YYGNRSACYMIYACIRRLLKMHRK 294
Y G C M+Y C+++ LK RK
Sbjct: 74 YEGYTDVCDMVYTCLKKYLKSDRK 97
>SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 539 SLGNGPYRTLPSIIISIKGTL 477
+LG PY T+PS +ISI G +
Sbjct: 530 TLGPSPYPTIPSTLISIDGVI 550
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 539 SLGNGPYRTLPSIIISIKGTL 477
+LG PY T+PS +ISI G +
Sbjct: 468 TLGPSPYPTIPSTLISIDGVI 488
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 91 VPKSPESLAEEKKDS--GNYLYKFKNYKGALAMYDEAIKLCPE 213
V +S+ +E+ +S GN LYK K Y A Y A KL E
Sbjct: 415 VDDDEDSVNDEENNSKTGNDLYKKKLYHKAFTKYSRATKLLEE 457
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 539 SLGNGPYRTLPSIIISIKGTL 477
+LG PY T+PS +ISI G +
Sbjct: 862 TLGPSPYPTIPSTLISIDGVI 882
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 127 KDSGNYLYKFKNYKGALAMYDEAIKLCP 210
KD+GN +K Y A+ +Y A+++CP
Sbjct: 437 KDAGNKKFKQGCYVEAIKIYTSALEVCP 464
>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 158
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 127 KDSGNYLYKFKNYKGALAMYDEAIKLCP 210
KD+GN +K Y A+ +Y A+++CP
Sbjct: 78 KDAGNKKFKQGCYVEAIKIYTSALEVCP 105
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 539 SLGNGPYRTLPSIIISIKGTL 477
+LG PY T+PS +ISI G +
Sbjct: 583 TLGPSPYPTIPSTLISIDGVI 603
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 539 SLGNGPYRTLPSIIISIKGTL 477
+LG PY T+PS +ISI G +
Sbjct: 398 TLGPSPYPTIPSTLISIDGVI 418
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 432 ELRALETLKRLHEDAQRALDAN 497
E+R LE + R EDA++AL AN
Sbjct: 746 EIRCLECMLRKQEDAEKALRAN 767
>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 375 GEQTVQRATELGGVECVSGELRALETLKRLHEDAQRALDANDYRR 509
GE+T +R+ LG S +L ++TL R H R + NDY++
Sbjct: 538 GEETRKRSPALGAQFKKSLDL-LMKTLSRCHPFFVRCIKPNDYKK 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,563
Number of Sequences: 59808
Number of extensions: 355825
Number of successful extensions: 1327
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -