Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00583X
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   1.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.6  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    24   9.8  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 406 VNAVKFCHGMYEYF 447
           VN VKF H +YEYF
Sbjct: 418 VNEVKFKHALYEYF 431


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 153 SRPNCLKSQMRAPKQ*KFTTVGNTRGRLCS-HLKRCNSNLNDKCN 284
           S PN  K++   P +   +T+G++ GR  S  ++R  SN  +  N
Sbjct: 57  SEPNVFKARPIPPPRQVSSTIGSSTGRKVSGSIQRLASNFKNPSN 101


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 397 RD*VNAVKFCHGMYEYFYVP 456
           +D  +AV  C+G YE  Y+P
Sbjct: 163 KDIFDAVSICNGHYEVPYIP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,737
Number of Sequences: 5004
Number of extensions: 30482
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)