Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00583X
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0196 + 2142132-2142416,2142882-2143574                           27   5.6  
05_03_0243 + 10845284-10845676,10846722-10846889,10846946-108470...    27   5.6  
10_01_0195 + 2137098-2137498,2137687-2137987                           27   9.7  
03_06_0647 - 35267177-35267323,35267461-35267547,35268319-352684...    27   9.7  

>10_01_0196 + 2142132-2142416,2142882-2143574
          Length = 325

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 426 TKFNSINSVTLMTHMLITASAGNYSTASVPI*NIVKKLEISIQ-FHLINYICH 271
           TK   + ++ L  HM++  + G Y T S  +    K ++   Q +H+++ I H
Sbjct: 32  TKMERLQNLLLKVHMIVEEAEGRYITNSKMLLQFKKIVKAMYQGYHVMDIIKH 84


>05_03_0243 +
           10845284-10845676,10846722-10846889,10846946-10847044,
           10847252-10847626
          Length = 344

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 186 APKQ*KFTTVGNTRGRLCSHLKRCNSNLNDKCN 284
           A KQ   T VGN  G     L+ C   LN++C+
Sbjct: 302 AKKQVLTTGVGNGLGDEIGELRECKQKLNEQCS 334


>10_01_0195 + 2137098-2137498,2137687-2137987
          Length = 233

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 411 INSVTLMTHMLITASAGNYSTASVPI*NIVKKLEISIQ-FHLINYICH 271
           ++++ L  HM++  + G Y T S  +    K +E   Q +H+++ I H
Sbjct: 4   LHNLLLKAHMIVEEAEGRYITNSKMLLQFKKIVETMYQGYHILDIIKH 51


>03_06_0647 -
           35267177-35267323,35267461-35267547,35268319-35268451,
           35268571-35268620,35269131-35269202,35269782-35270004,
           35270331-35270604,35270687-35270813,35270942-35271189,
           35271682-35271772
          Length = 483

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 81  LRAFYGQCHSEVLVLVTPWTDAAPSRPNCLKSQMRAP 191
           +R  Y QC  +     + W  A P+R  C+K QM  P
Sbjct: 269 IRTVYSQC-LQSNTRGSGWLAALPTRATCMKPQMWRP 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,669
Number of Sequences: 37544
Number of extensions: 191900
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)