Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00583X
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52751| Best HMM Match : CD225 (HMM E-Value=1.1)                     27   5.7  
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)                      27   7.6  
SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_19456| Best HMM Match : ig (HMM E-Value=3e-08)                      27   7.6  

>SB_52751| Best HMM Match : CD225 (HMM E-Value=1.1)
          Length = 238

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 217 PTVVNFYCFGALI*LLRQLGRDGAASVQGVT 125
           P ++ F CFGAL+ +LR   RD    +Q +T
Sbjct: 71  PFIIAFLCFGALMVMLR--ARDNIIRIQHLT 99


>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 123 LVTPWTDAAPSRPNCLKSQMRAPKQ*KFTTVGNTR 227
           +VT W D A S+P  L S M  P+  KF TV   R
Sbjct: 621 VVTIWRDKAKSKPVTLVSTMYEPE--KFETVTRRR 653


>SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)
          Length = 557

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 87  AFYGQCHSEVLVLVTPWTDAAPSRPNCLKSQMR 185
           +F G+C  ++ V V P T  +PSR  CL ++ R
Sbjct: 414 SFAGECKGQMKVGVIPLTPVSPSR--CLSTKSR 444


>SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 RLCSHLKRCNSNLNDKCN 284
           R   HLKRCN NL D  N
Sbjct: 32  RTLDHLKRCNVNLPDNVN 49


>SB_19456| Best HMM Match : ig (HMM E-Value=3e-08)
          Length = 195

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 373 SKCRKLQYSFGTNLKHRKKIGNQYSISLN*LHLSFKLE 260
           S CR    SF  +     ++ NQYS+ LN  HLS +++
Sbjct: 121 SYCRSSTISFNCSATGHPRV-NQYSLYLNSRHLSSRMD 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,412
Number of Sequences: 59808
Number of extensions: 228777
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)