Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00583X
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70212-3|CAA94161.1|  226|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 376 YSKCRKLQYSFGTNLKHRKKIGNQY 302
           YSK RK  + F  NLK  +KIG +Y
Sbjct: 402 YSKTRK-SFEFSENLKFLEKIGQKY 425


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 376 YSKCRKLQYSFGTNLKHRKKIGNQY 302
           YSK RK  + F  NLK  +KIG +Y
Sbjct: 402 YSKTRK-SFEFSENLKFLEKIGQKY 425


>Z82067-1|CAB63317.1|  794|Caenorhabditis elegans Hypothetical
           protein W03H9.1 protein.
          Length = 794

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 373 SKCRKLQYSFGTNLKHRKKIGNQYSISLN*LH-LSFKLEL 257
           S+CR+L+ SFG + K R  +      SLN  H +  +LEL
Sbjct: 83  SRCRQLETSFGESEKMRCALAADSEKSLNDYHDVQTQLEL 122


>Z70212-3|CAA94161.1|  226|Caenorhabditis elegans Hypothetical
           protein R04D3.4 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 343 GTNLKHRKKIGNQYSISLN*LHLSFK-LELHRFRWEQSRPRVFPT 212
           GT  KH+KK GN++ I    +   F+ + L +F +  +     PT
Sbjct: 154 GTKSKHQKKHGNRFMIDHELILQQFRDISLEQFEFSSNSGNAPPT 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,605
Number of Sequences: 27780
Number of extensions: 175555
Number of successful extensions: 343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)