Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00581
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   0.97 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   9.0  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 140  TLSTQDAITKKKRKIIKQYFTIFLKSKT 223
            T ST +   K KR  +  + T+FLKSK+
Sbjct: 1102 TKSTSEPSAKSKRNAVSTFETVFLKSKS 1129


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 396 FSPNFKVYVCTKNSVIKLPILRPRKNPSSP*ISIFKLLSPKIETKF 259
           F  N  VY+CT N  ++L +   R +P+S   +I + L   ++T F
Sbjct: 14  FLENQYVYLCTLNDYVQLVL---RGSPASSYSNICERLRSDVQTSF 56


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 577 HVGLTFY*IKKKDIFFRLNSKFINLFSLILKHFRC 473
           H G TF+ ++K + F + ++ F +L   ++  F C
Sbjct: 4   HHGWTFHKLRKNEHFLKYSAIFYSLLKPVVALFAC 38


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 523 NSKFINLFSLILKHFRC-HIV 464
           N   +N+F L +  FRC HIV
Sbjct: 93  NENIVNIFDLYIDQFRCLHIV 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,448
Number of Sequences: 5004
Number of extensions: 42617
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)