Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00581
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine rece...    28   4.8  
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U80024-2|AAK18892.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein125 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 443 PLEISRLTIVSYVLIHFLLILRCMFAQKTR*LSYPSYVLA-RILRVLKSQFL 291
           P+ I    I+S V I  +L  +C+  QK R +S  +Y +  R ++ L  QFL
Sbjct: 200 PMFIEMFFIISQVTIITILTYQCLATQKFR-MSQTTYQMQNRFVKALSVQFL 250


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 140 CIICFILELRLSINLFCSYFIICVAVPYVINDRI 39
           C++   LE+  S+    S+FI C AV +V ND++
Sbjct: 534 CVVGEDLEVLASVCSVLSFFIRCSAVQHVDNDKM 567


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 140 CIICFILELRLSINLFCSYFIICVAVPYVINDRI 39
           C++   LE+  S+    S+FI C AV +V ND++
Sbjct: 595 CVVGEDLEVLASVCSVLSFFIRCSAVQHVDNDKM 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,176,850
Number of Sequences: 27780
Number of extensions: 230723
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)