Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00579X
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.26
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 3.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 3.2
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 25 3.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 4.2
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 5.5
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 24 7.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 7.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 24 7.3
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 23 9.6
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.7 bits (61), Expect = 0.26
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 106 QVACRHQDNVYKVGEKWKSPTDVCETYECAA-DGDGKLQRLAAVQRCDRHCSPA 264
Q+ HQD VY + K+ D CA+ GDG ++ A +RC+R S A
Sbjct: 58 QLGRGHQDGVYSLARDTKTLID------CASGSGDGAVKLWDASERCERWTSKA 105
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 218 CSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSWCLHATCTGSAQHAKGTGRGSSTNS 51
C+ PS SYV + D P + + LH TC G + T +TNS
Sbjct: 601 CAFPSFPRDQSYVVEVVIEDTITKPFVSFQTAMLHTTCNGERRIRVLTISLPTTNS 656
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 3.2
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = -1
Query: 269 FPAGLQCRSQRCTAASRCSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSWCLHATCTGSAQ 90
+ L T S SP ++S V TSV S T + S+ T + ++
Sbjct: 271 YSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSV 330
Query: 89 HAKGTGRGSSTNSS 48
GTG GS+T +S
Sbjct: 331 TYTGTGTGSATFTS 344
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 3.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 118 RHQDNVYK-VGEKWKSPTDVCETYECAADGDGKLQRLA-AVQRCDRHCSPAG 267
RHQ + +K VGE W+ P + G + ++ + R+C P G
Sbjct: 16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMPNG 67
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 4.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 211 KLQRLAAVQRCDRHCSPAGNTS 276
K+Q RCD HCS + TS
Sbjct: 20 KIQEKGKSNRCDTHCSGSSWTS 41
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 5.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 242 QRCTAASRCSLPSPSAAHSYV-SHTSVGDFHFSPTL*TLSWCLHATCTGSAQHA 84
QR T+ RCS P P+ + S+T DF + + S A GS H+
Sbjct: 358 QRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHHS 411
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 200 SAAHSYVSHTSVGDF--HFSPTL*TLSWCLHATCTGSAQHAKGT 75
+AA + + DF +F T+ +LS CLH T +GT
Sbjct: 488 AAAIGSAAFAAQDDFIPYFERTMASLSQCLHTTDDDEGYELRGT 531
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 218 CSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSW 123
CSLP +A + + V +F F+ T +SW
Sbjct: 1958 CSLPIETAYYYSIHIRPVSEFKFNWTSEAISW 1989
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 23.8 bits (49), Expect = 7.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 115 CRHQDNVYKVGEKWK 159
C QD+V+K+ KW+
Sbjct: 416 CNRQDSVFKIITKWR 430
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 188 SYVSHTSVGDFHF 150
SY+ H V DFHF
Sbjct: 33 SYIKHLKVVDFHF 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,667
Number of Sequences: 5004
Number of extensions: 15718
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -