Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00579X
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 30 0.40
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308... 27 3.8
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 27 3.8
06_03_0395 - 20354713-20355570 27 5.0
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 26 6.6
08_02_1322 + 26131395-26131599,26132382-26132468,26133119-261333... 26 6.6
04_04_0538 + 26085181-26085654 26 6.6
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405... 26 6.6
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 26 8.7
02_02_0671 - 12811102-12811608 26 8.7
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 26 8.7
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -1
Query: 266 PAGLQCRSQRCTAASRCSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSWCLHATCTGSAQ 90
P G++ AA+ S P P H V T + S L W + TCT A+
Sbjct: 4 PRGVRSPKPMAAAAASASPPQPRPGHMLVLGTGFVGRYVSQRLLAQGWRVSGTCTSPAK 62
>12_02_0027 +
12427525-12427698,12430082-12430150,12430763-12430823,
12431147-12431264,12431346-12431422,12432881-12432996,
12433227-12433661
Length = 349
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 19 VSACPAVVSSELFVLEPRPVPFACCAEPVQV 111
+ A P ++ F LEP P C EPVQ+
Sbjct: 112 IHAYPGFIN--FFPLEPEPAELECSREPVQI 140
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.1 bits (57), Expect = 3.8
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Frame = +1
Query: 61 LEPRPVPFACCAEPVQVA----CRHQDNVYKVGEKWK-SPTDVCETYECAADGDGKLQRL 225
L P P P CC +VA C W+ P VC C+ G G+ L
Sbjct: 79 LRPPPPPPRCCHRRRRVAARCCCCGGGGSVAGHVSWRLDPPRVC---RCSGHGAGRSSDL 135
Query: 226 AAVQRCDRHCSPAGNTSRL 282
AV R C G RL
Sbjct: 136 GAVYRRRLECRCGGGGGRL 154
>06_03_0395 - 20354713-20355570
Length = 285
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -3
Query: 303 STGRYRLQPGRISSRAAVPVAAL 235
S GR RLQ GRI + AAV A+
Sbjct: 194 SGGRIRLQRGRIGASAAVAAVAI 216
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 149 SPTL*TLSWCLHATCTGSAQHAKGTGRGSSTNSSELTTAGHAD 21
+P + T +WC TG+ QH + + S+ S GH +
Sbjct: 272 NPIIVTPAWCYSEATTGTLQHEQNSSSHSNGARSYDIWKGHVN 314
>08_02_1322 +
26131395-26131599,26132382-26132468,26133119-26133372,
26133430-26133526,26133613-26133693,26133782-26133976,
26134093-26134182,26134296-26134471,26134565-26134687,
26134799-26134945,26135027-26135163,26135247-26135364,
26135462-26135518
Length = 588
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 133 VYKVGEKWKSPTDVCETYECAA 198
+ K GEKW++P D+ E C A
Sbjct: 167 ILKEGEKWENPKDLDELTLCIA 188
>04_04_0538 + 26085181-26085654
Length = 157
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 190 CAADGDGKLQRLAAVQRCDRHCSPAGNTSRLKPI 291
C +G+G+ Q + V+ R C+ G+ R +P+
Sbjct: 82 CEEEGEGEQQMVEEVEEGLRECALQGSKRRKRPV 115
>03_01_0540 -
4055635-4055743,4055829-4055981,4056037-4056104,
4056486-4056580,4057180-4057241,4057371-4057410,
4058124-4059141,4059231-4059611,4059873-4059880,
4061005-4061067,4061416-4061719
Length = 766
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 13 CAVSACPAVVSSELFVLEPRPVPFA 87
C V A P + ++ELFVL P+PF+
Sbjct: 102 CPVQAFPVICATELFVL---PLPFS 123
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 13 CAVSACPAVVSSELFVLEPRPVPFACCAE 99
CA ACP ++ S VL P PV A +
Sbjct: 23 CAAPACPWLLGSAPPVLAPSPVAAAAAGD 51
>02_02_0671 - 12811102-12811608
Length = 168
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 67 PRPVPFACCAEPVQVACRHQDNVYKVGEKWKSPTDV 174
P P P++ P + +H+ NV W TDV
Sbjct: 128 PLPKPYSPTLPPCSLPQKHRFNVVHTQPTWTGATDV 163
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -1
Query: 227 ASRCSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSWCLHATCTGSAQH 87
ASRC +PS AH + DF+ SP + T W +T G Q+
Sbjct: 568 ASRCQKSAPSYAHFF------PDFNRSPRI-TSDWLRPSTFEGDLQY 607
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,671,866
Number of Sequences: 37544
Number of extensions: 148346
Number of successful extensions: 633
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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