Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00579X
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.96 
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   1.7  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   27   2.9  
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)               27   3.9  
SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)       27   5.1  
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)                    27   5.1  
SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)       27   5.1  
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)                      26   9.0  
SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)                   26   9.0  

>SB_3991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 115 CRHQDNVYKVGEKWKSPTDVCETYEC 192
           CR    VY  G++WK   + C T  C
Sbjct: 149 CRDNGTVYHNGDRWKHSNNTCITCHC 174


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 275 DVFPAGLQCRSQRCTAASRCSLPSPSAAHSYVSHTSVGDF 156
           DVFP    CR    T + RC   S   + SY+S   V  F
Sbjct: 147 DVFPIACSCRCFPITCSCRCVPQSMLMSMSYLSRAHVDVF 186


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 31  PAVVSSELFVLEPRPV--PFACCAEPVQ 108
           PA++SS   +L P PV  P  CC++P +
Sbjct: 767 PAMISSNGSILNPGPVKFPCGCCSKPTK 794


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = +1

Query: 10  TCAVSACPAVVSSELFVLEPRPVPFACCAEPVQVACRHQDNVYKVGEKWKSPTDVC 177
           TC++         E FV     V    C +  +  C H   +YK G+K      +C
Sbjct: 206 TCSMRCVEGCECKEEFVQRVNAVGKVQCIKRKECPCIHDAKIYKPGDKVYKDCQLC 261


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 182 VSHTSVGDFHFSPTL*TLSWCLHATC 105
           +++ S  + HF  TL TL + LHA+C
Sbjct: 609 IANVSPANTHFGETLSTLRYPLHASC 634


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -1

Query: 110 TCTGSAQHAKGTGRGSSTNSSELTTAGH-ADTAHVA 6
           TC  S  H K   R S T    +T  G+ A T H +
Sbjct: 151 TCQASRIHGKNVSRKSGTRQKRVTQVGYTAKTCHAS 186


>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
          Length = 367

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 333 LRRPRARTCHSTGRYRLQPGRISSRAAVP 247
           LRR + + CH  GRY L      +R  +P
Sbjct: 337 LRRQKEKFCHMKGRYLLDEKNEPTRITIP 365


>SB_12772| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
          Length = 213

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 154 WKSPTDVCETYECAADGDGKLQRLAAVQRCDRHC 255
           +K+P   C  YEC +DG  +   +  V  C R C
Sbjct: 36  FKAPARGCR-YECFSDGQCQPDHVCCVSGCYRKC 68


>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
          Length = 520

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
 Frame = -1

Query: 209 PSPSAAHSYVSHTSVGDFHFSPTL*TLSW--CLHATCTGSAQHAKGTGRGSSTNSSELTT 36
           PSP ++ S  +  S   +   P     SW  C       +    + T RGSST    L  
Sbjct: 141 PSPGSS-STPTWRSGKSYTQEPNRLASSWRSCCATAAACTPLTTQETSRGSSTGRRSLAA 199

Query: 35  AGHADTAHVAA 3
           A HAD   + A
Sbjct: 200 AMHADPTTILA 210


>SB_34621| Best HMM Match : Thyroglobulin_1 (HMM E-Value=4.4e-05)
          Length = 129

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 154 WKSPTDVCETYECAADGDGKLQRLAAVQRCDRHC 255
           +K+P   C  YEC +DG  +   +  V  C R C
Sbjct: 7   FKAPARGCR-YECFSDGQCQPDHVCCVSGCYRKC 39


>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = -1

Query: 245 SQRCTAASRCSLPSPSAAHSYVSHTSVGDFHFSPTL*TLSWCLHATCTGSAQHAKGTGRG 66
           +Q  TA    ++ S + A + +S+TS   F  S    T +  L +  T  ++ ++G+   
Sbjct: 737 TQASTAEVAQNIVSSAVAQA-ISNTSSSSFEPSGAEGTSAASLGSPMTLGSEVSQGSSEM 795

Query: 65  SSTNSSELTTAGHAD 21
           S++    +TT+ H D
Sbjct: 796 STSPQQSMTTSEHGD 810


>SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)
          Length = 250

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 73  PVPFACCAEPVQVACRHQDNVYKVGEKWKSPTDVCETYECAADGDGKLQRLAAVQRCDRH 252
           P+  A   +  Q+   + DN+  V E   +  D+   +    +GDG LQ    ++  D+ 
Sbjct: 2   PILGAQAIQQFQLMTINSDNILSVNEFQSTQQDIVSEFGDVFEGDGVLQEKLHLE-VDKT 60

Query: 253 CSPAGNTSRLKP 288
            +P     R  P
Sbjct: 61  VTPVALPVRKVP 72


>SB_43987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -1

Query: 203  PSAAHSYVSHTS-VGDFHFSPTL*TLSWCLHATCTGSAQHAKGTGRGSSTNSSELTTAGH 27
            PS   S +  T+ V +   +P+  T  W  H T     QH     +G+  +       GH
Sbjct: 905  PSKLRSGLFTTAAVDNIDHNPSSTTSQWSFHGTAISLVQHPDADEQGTRRDPDVYDATGH 964


>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
          Length = 998

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 163 PTDVCETYECAADGDGKLQRLAAVQRCD----RHCSPAGNT 273
           P+DV +    A+DGD KL  L   +RCD    R+ + A NT
Sbjct: 134 PSDV-QRPRSASDGDKKLFALPTKERCDSDHTRNANKAYNT 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,942
Number of Sequences: 59808
Number of extensions: 152583
Number of successful extensions: 506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)