Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00579X
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 70  RPVPFACCAEPVQVAC 117
           +P+P +CC  P    C
Sbjct: 157 KPIPASCCNSPENNTC 172


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 245 SQRCTAASRCSLPS 204
           S+ CTA  RC +PS
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 245 SQRCTAASRCSLPS 204
           S+ CTA  RC +PS
Sbjct: 143 SRGCTAVLRCVVPS 156


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  EPVQVACRHQDNVYKVGEKWKSPTDVCET 183
           EP+ +A       YK+ EKW + +++  T
Sbjct: 177 EPIILADELHLTEYKLVEKWVNSSEIFYT 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,399
Number of Sequences: 438
Number of extensions: 1148
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)