Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00579X
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51330.1 68416.m05619 aspartyl protease family protein contai...    27   3.2  
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    27   4.2  
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    26   5.6  
At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00...    26   5.6  
At4g24910.1 68417.m03566 hypothetical protein contains Pfam prof...    26   7.4  
At3g19990.1 68416.m02529 expressed protein                             25   9.7  
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    25   9.7  
At2g40980.1 68415.m05062 expressed protein                             25   9.7  
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    25   9.7  

>At3g51330.1 68416.m05619 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 529

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 263 AGLQCRSQRCTAASRCSLPSPSAAH 189
           + ++C   RC  +SRCS P+ S  +
Sbjct: 163 SSIRCSDDRCFGSSRCSSPASSCPY 187


>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 148 EKWKSPTD--VCETYECAADGDGKLQRLAAVQRCDRHC 255
           ++W S  +  VCE ++  +  D ++  L   Q C + C
Sbjct: 72  QQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRC 109


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 124 QDNVYKVGEKWKSPTDVCETYECAADGDG 210
           +D++Y +G       D+ +T EC  +G+G
Sbjct: 573 KDSIYVIGGYKGEEDDILDTVECFKEGEG 601


>At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 55  FVLEPRPVPFACCAEPVQVACRHQDNVYKVGE 150
           F+L+     F CC     +    +DNVY VGE
Sbjct: 311 FLLDEEKKVFLCCKSKGWMEEEDEDNVYIVGE 342


>At4g24910.1 68417.m03566 hypothetical protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 315

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 NVYKVGEKWKSPTDVCETYECAADGDGKLQRLAAVQRCDRHCSP 261
           +V++  EKW S   +C+    +A G     R+       R CSP
Sbjct: 266 DVHRTAEKWLSWEFLCQENLVSAKGTFWKFRIKRQSNASRFCSP 309


>At3g19990.1 68416.m02529 expressed protein
          Length = 425

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 121 HQDNVYKVGEKWKSPTDVC 177
           H  ++YK+ + WK+P  VC
Sbjct: 57  HLIDIYKILKLWKAPESVC 75


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 224 SRCSLPSPSAAHSYVSHT-SVGDFHFSPTL*TLSWCLHATCTGSAQHAKGTGRGSSTNSS 48
           S  S PS S  +  V+ T S   FH       +SW   A+        +    GS+ N  
Sbjct: 720 SPASRPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTENWGTQNRAGFNGSTNNLD 779

Query: 47  ELTTAGHADT 18
            ++TA H  T
Sbjct: 780 NISTANHPPT 789


>At2g40980.1 68415.m05062 expressed protein 
          Length = 617

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 133 VYKV-GEKWKSPTDVCETYECAADGDGKLQRLAAVQRCDRHCSPAGNTS 276
           V KV G+  K   D+   YECAAD   K  ++ AV   DR  +  GN +
Sbjct: 169 VVKVEGDVNKLDFDLNNVYECAADWIKKHSKI-AVSPVDRIWNKLGNAN 216


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 124 QDNVYKVGEKWKSPTDVC 177
           +D++ K+G K K P+D+C
Sbjct: 26  EDSILKIGGKLKLPSDLC 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,472,789
Number of Sequences: 28952
Number of extensions: 95612
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)