Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00578X
(552 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 25 0.67
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 25 0.67
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 25 0.67
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 24 0.89
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 2.7
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 2.7
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 2.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 8.3
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 8.3
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 8.3
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.6 bits (51), Expect = 0.67
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 411 TRHYLTVVN*EGYREYILSMVLESS 337
+++Y+T+++ G+R++I +M+ +S
Sbjct: 10 SKYYVTIIDAPGHRDFIKNMITGTS 34
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.6 bits (51), Expect = 0.67
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 411 TRHYLTVVN*EGYREYILSMVLESS 337
+++Y+T+++ G+R++I +M+ +S
Sbjct: 26 SKYYVTIIDAPGHRDFIKNMITGTS 50
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = -1
Query: 411 TRHYLTVVN*EGYREYILSMVLESS 337
+++Y+T+++ G+R++I +M+ +S
Sbjct: 83 SKYYVTIIDAPGHRDFIKNMITGTS 107
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 24.2 bits (50), Expect = 0.89
Identities = 7/24 (29%), Positives = 19/24 (79%)
Frame = -1
Query: 408 RHYLTVVN*EGYREYILSMVLESS 337
++Y+T+++ G+R++I +M+ +S
Sbjct: 84 KYYVTIIDAPGHRDFIKNMITGTS 107
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.7
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 134 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVRLVTVITHFPVLGTRLC 304
I+SS +KT+ +K + NNY K+LY + ++I + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIP--IPVPVYYGNFPPRPM 138
Query: 305 VCGISLQARLP 337
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.7
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 134 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVRLVTVITHFPVLGTRLC 304
I+SS +KT+ +K + NNY K+LY + ++I + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIP--IPVPVYYGNFPPRPM 138
Query: 305 VCGISLQARLP 337
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 2.7
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 134 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVRLVTVITHFPVLGTRLC 304
I+SS +KT+ +K + NNY K+LY + ++I + + V ++ R
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIP--IPVPVYYGNFPPRPM 138
Query: 305 VCGISLQARLP 337
IS+Q ++P
Sbjct: 139 GPWISMQEQIP 149
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 470 WMVYLHSARVFQSLIVLSRE 411
W++YLH + V +VL E
Sbjct: 424 WIIYLHISDVVADDLVLLEE 443
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 470 WMVYLHSARVFQSLIVLSRE 411
W++YLH + V +VL E
Sbjct: 424 WIIYLHISDVVADDLVLLEE 443
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.0 bits (42), Expect = 8.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 400 IVSSSRDKTIKLWNTLAE 453
IVS +R+ TI++W + +
Sbjct: 278 IVSPTRELTIQIWQQIVK 295
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,728
Number of Sequences: 438
Number of extensions: 3503
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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